RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 HIST1H1EP10412 219 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 COL11A1P12107 1806 aaPredicted RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 COX7A2P14406 83 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 MMP9P14780 707 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 HIST1H1TP22492 207 aaPredicted RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 CDK2P24941 298 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RPL12P30050 165 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 SLC6A6P31641 620 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 FCGR2CP31995 323 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 PRSS3P35030 304 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OPRM1P35372 400 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 TSFMP43897 325 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 GALR1P47211 349 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR1D4P47884 311 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 P2RY1P47900 373 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SLC6A12P48065 614 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 REG1BP48304 166 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 LHX2P50458 406 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZNF83P51522 516 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 CRYBA2P53672 197 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 MTCP1P56278 107 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RND3P61587 244 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 GNB2P62879 340 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RPL38P63173 70 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 Q0VG73 95 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 IL15RAQ13261 267 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RUNX3Q13761 415 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 LY6DQ14210 128 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 INSL4Q14641 139 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 PSG5Q15238 335 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ELOCQ15369 112 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 TNXAQ16473 311 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SGCBQ16585 318 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RALGAPA2Q2PPJ7 1873 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZNF791Q3KP31 576 aaPredicted RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 TMEM97Q5BJF2 176 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SLC25A53Q5H9E4 307 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 BVES-AS1Q5T3Y7 98 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 TMEM78Q5T7P6 136 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 CST9LP1Q5W188 147 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 STUMQ69YW2 141 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 DMKNQ6E0U4 476 aaPredicted RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 PWWP2BQ6NUJ5 590 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ARL9Q6T311 187 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SBSNQ6UWP8 590 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZNF621Q6ZSS3 439 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 Q6ZVH6 145 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR4N5Q8IXE1 308 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SLC35F2Q8IXU6 374 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 KMT2EQ8IZD2 1858 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 LRRC75A-AS1Q8N1F1 130 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 C10orf111Q8N326 155 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZADH2Q8N4Q0 377 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 Q8N976 141 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 CLEC1AQ8NC01 280 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 ZNF439Q8NDP4 499 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR5AR1Q8NGP9 310 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR2K2Q8NGT1 345 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR2T10Q8NGZ9 312 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR8S1Q8NH09 359 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR4K13Q8NH42 304 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 MARCH1Q8TCQ1 289 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SLC38A5Q8WUX1 472 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 IGSF8Q969P0 613 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 CXorf40BQ96DE9 158 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RNF125Q96EQ8 232 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 DYNLL2Q96FJ2 89 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 DOCK6Q96HP0 2047 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 HPDLQ96IR7 371 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 DNAJC30Q96LL9 226 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 C2orf50Q96LR7 162 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 VSTM2LQ96N03 204 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SCGB3A2Q96PL1 93 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 TNFRSF13CQ96RJ3 184 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 TRIB3Q96RU7 358 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 MYADMQ96S97 322 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 GPR21Q99679 349 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 NRTNQ99748 197 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RARRES2Q99969 163 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 HSPB9Q9BQS6 159 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 AGMATQ9BSE5 352 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 RTBDNQ9BSG5 229 aaPredicted RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 NDFIP1Q9BT67 221 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 LRRC61Q9BV99 259 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 SAMD10Q9BYL1 202 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 STRADBQ9C0K7 418 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 WDR61Q9GZS3 305 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 CHRNA10Q9GZZ6 450 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 NXF5Q9H1B4 397 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 TMEM133Q9H2Q1 129 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 OR51I2Q9H344 312 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 EGLN3Q9H6Z9 239 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 MANBALQ9NQG1 85 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 CMC2Q9NRP2 79 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 EHFQ9NZC4 300 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 IL36GQ9NZH8 169 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 NUDT4Q9NZJ9 180 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 AK3Q9UIJ7 227 aa2.04□□□□□ -2.08
SKA3-207ENST00000536239 NXT1Q9UKK6 140 aaKnown RBP2.04□□□□□ -2.08
SKA3-207ENST00000536239 SIGLEC9Q9Y336 463 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms