RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 NDFIP1Q9BT67 221 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 APOOQ9BUR5 198 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 ST6GALNAC5Q9BVH7 336 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 TMEM59Q9BXS4 323 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 KRTAP4-2Q9BYR5 136 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 HES4Q9HCC6 221 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 GCM1Q9NP62 436 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 NGBQ9NPG2 151 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 KCNIP2Q9NS61 270 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.91□□□□□ -1.62
CD44-225ENST00000527326 SERTAD4Q9NUC0 356 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 VPREB3Q9UKI3 123 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 LY96Q9Y6Y9 160 aa4.91□□□□□ -1.62
CD44-225ENST00000527326 KBTBD11-OT1A0A1B0GTJ5 212 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 LOC107986453A0A1B0GWG9 222 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 A0A1W2PQM1 296 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 GLOD5A6NK44 160 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 LRRC30A6NM36 301 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 B5MCH6 92 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 ZNF561-AS1K7EIQ3 104 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 M0R2Z0 102 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SDCBPO00560 298 aaPredicted RBP4.9□□□□□ -1.63
CD44-225ENST00000527326 WNT10BO00744 389 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SYNGR1O43759 233 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 HSBP1O75506 76 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 TMEM50AO95807 157 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 MPIG6BO95866 241 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 TGFAP01135 160 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SPINK8P0C7L1 97 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SP9P0CG40 484 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT45A6P0DMU7 189 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT45A5P0DMU8 189 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT45A7P0DMV0 189 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 NTF3P20783 257 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 GATA3P23771 443 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 OTX2P32243 289 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SSR2P43308 183 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 KIR2DS4P43632 304 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 IER3P46695 156 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 GNG3P63215 75 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 HBG1P69891 147 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 HBG2P69892 147 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 PSG4Q00888 419 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 MEF2CQ06413 473 aaPredicted RBP4.9□□□□□ -1.63
CD44-225ENST00000527326 KLF5Q13887 457 aaPredicted RBP4.9□□□□□ -1.63
CD44-225ENST00000527326 MEP1BQ16820 701 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 LY6KQ17RY6 165 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT45A1Q5HYN5 189 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 TMEM240Q5SV17 173 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SPATA31B1PQ5VZV4 182 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 DHRS13Q6UX07 377 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 FAM57BQ71RH2 274 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 DOK3Q7L591 496 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 SPATA12Q7Z6I5 190 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 C1orf210Q8IVY1 113 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 TMEM52Q8NDY8 209 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 OR4A16Q8NH70 328 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 ATP6V0E2Q8NHE4 81 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT45A3Q8NHU0 189 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 ZNF502Q8TBZ5 544 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 CT55Q8WUE5 264 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 RAB40CQ96S21 281 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 PAAF1Q9BRP4 392 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 C19orf24Q9BVV8 132 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 C1QTNF4Q9BXJ3 329 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 NECAP2Q9NVZ3 263 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 TIMM13Q9Y5L4 95 aaPredicted RBP4.9□□□□□ -1.63
CD44-225ENST00000527326 ARL2-SNX15V9GYD0 113 aa4.9□□□□□ -1.63
CD44-225ENST00000527326 ANAPC1Q9H1A4 1944 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 VCANP13611 3396 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 RANBP2P49792 3224 aaKnown RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 A0A0A6YYD4 124 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE12JA6NER3 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 C2orf70A6NJV1 201 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 VWC2LB2RUY7 222 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 C11orf94C9JXX5 98 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 H0Y980 276 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 H3BSH0 61 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 RER1O15258 196 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 SOCS1O15524 211 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 PHF1O43189 567 aaPredicted RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 ANGPTL7O43827 346 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 FOXH1O75593 365 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE7O76087 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 CST7O76096 145 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 AGFG2O95081 481 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 CER1O95813 267 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 CA1P00915 261 aaPredicted RBP4.89□□□□□ -1.63
CD44-225ENST00000527326 APOA2P02652 100 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 AMY1AP04745 511 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE12FP0CL80 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE12GP0CL81 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE12IP0CL82 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 COX8AP10176 69 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GPR1P46091 355 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 GAGE4Q13068 117 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 KIR3DS1Q14943 382 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 PDCD1Q15116 288 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 ZNF141Q15928 474 aa4.89□□□□□ -1.63
CD44-225ENST00000527326 NRN1LQ496H8 165 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms