RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 NEUROG1Q92886 237 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 MS4A5Q9H3V2 200 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 SMDT1Q9H4I9 107 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 TMEM106BQ9NUM4 274 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 PRELID3BQ9Y3B1 194 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 PPIAL4AQ9Y536 164 aa13.12□□□□□ -0.31
USH1C-204ENST00000526313 MED19A0JLT2 244 aaPredicted RBP13.11□□□□□ -0.31
USH1C-204ENST00000526313 TMPRSS2O15393 492 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 ZG16O60844 167 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 IGHV3-7P01780 117 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 OR9G9P0C7N8 305 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 CHRNB4P30926 498 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 SCGB1C1Q8TD33 95 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 DTD1Q8TEA8 209 aa13.11□□□□□ -0.31
USH1C-204ENST00000526313 WDR61Q9GZS3 305 aaKnown RBP13.11□□□□□ -0.31
USH1C-204ENST00000526313 SAA2-SAA4A0A096LPE2 208 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 TRAV1-1A0A0B4J248 108 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 FAM74A7A6NL05 159 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 MMP23AO75900 390 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SNAPINO95295 136 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 LY86O95711 162 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SAA2P0DJI9 122 aaPredicted RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 ATP6V1FQ16864 119 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 FAM74A3Q4VXF1 159 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 AKR1C8PQ5T2L2 129 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 CENPVQ7Z7K6 275 aaPredicted RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 OR52E5Q8NH55 327 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 LEAP2Q969E1 77 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 S1PR3Q99500 378 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SLC25A10Q9UBX3 287 aaPredicted RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 ROS1P08922 2347 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 B9A039 149 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 CD3EP07766 207 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 H2AFB1P0C5Y9 115 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 NQO2P16083 231 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 CCL20P78556 96 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SERF2P84101 59 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SLC38A11Q08AI6 406 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 SLC25A48Q6ZT89 311 aaKnown RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 ADTRPQ96IZ2 230 aa13.1□□□□□ -0.31
USH1C-204ENST00000526313 QTRT1Q9BXR0 403 aaKnown RBP13.1□□□□□ -0.31
USH1C-204ENST00000526313 THBS3P49746 956 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 MRPS11P82912 194 aaKnown RBP13.09□□□□□ -0.31
USH1C-204ENST00000526313 TLE4Q04727 773 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 ZDHHC16Q969W1 377 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 PBDC1Q9BVG4 233 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 NDRG3Q9UGV2 375 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 FBXO7Q9Y3I1 522 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 TIMM9Q9Y5J7 89 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 KPTNQ9Y664 436 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 ADGRG4Q8IZF6 3080 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 HCFC1P51610 2035 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 A0A1W2PPE3 182 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 CCL21O00585 134 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 F12P00748 615 aaPredicted RBP13.09□□□□□ -0.31
USH1C-204ENST00000526313 GNB2P62879 340 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 VWC2Q2TAL6 325 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 DHRS7BQ6IAN0 325 aaPredicted RBP13.09□□□□□ -0.31
USH1C-204ENST00000526313 SLC25A24Q6NUK1 477 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 LILRB2Q8N423 598 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 OR4S2Q8NH73 311 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 RSG1Q9BU20 258 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 KIAA1456Q9P272 454 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 KAAG1Q9UBP8 84 aa13.09□□□□□ -0.31
USH1C-204ENST00000526313 ARFGEF3Q5TH69 2177 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 TSPAN4O14817 238 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 NUPL2O15504 423 aaKnown RBP13.08□□□□□ -0.32
USH1C-204ENST00000526313 NDUFB7P17568 137 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 NFYBP25208 207 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 NPBWR1P48145 328 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 SPCS3P61009 180 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 RELBQ01201 579 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 POU2AF1Q16633 256 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 ZNF383Q8NA42 475 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 LINC01560Q8TB33 94 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 CCL17Q92583 94 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 TAF15Q92804 592 aaKnown RBP eCLIP13.08□□□□□ -0.32
USH1C-204ENST00000526313 EIF5A2Q9GZV4 153 aaKnown RBP13.08□□□□□ -0.32
USH1C-204ENST00000526313 RPRMQ9NS64 109 aa13.08□□□□□ -0.32
USH1C-204ENST00000526313 GPR37O15354 613 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 ATF4P18848 351 aaPredicted RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 MDKP21741 143 aaPredicted RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 RPL31P62899 125 aaKnown RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 ADORA2A-AS1P86434 159 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 PRAMEF5Q5TYX0 476 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 HEPN1Q6WQI6 88 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 ZNF429Q86V71 674 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 MBD3L1Q8WWY6 194 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 PINX1Q96BK5 328 aaKnown RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 TMEM147Q9BVK8 224 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 GAL3ST2Q9H3Q3 398 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 DYNLRB1Q9NP97 96 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 SPTBN4Q9H254 2564 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 CEBPZOSA8MTT3 80 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 SCAF4O95104 1147 aaKnown RBP13.07□□□□□ -0.32
USH1C-204ENST00000526313 PLAUP00749 431 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 HBE1P02100 147 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 ARG1P05089 322 aa13.07□□□□□ -0.32
USH1C-204ENST00000526313 PPT1P50897 306 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms