RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SP6Q3SY56 376 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 TMEM128Q5BJH2 165 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 CCBE1Q6UXH8 406 aaPredicted RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 PDPNQ86YL7 162 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 SGPP2Q8IWX5 399 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 OR2T10Q8NGZ9 312 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 ZNF418Q8TF45 676 aaPredicted RBP13.03□□□□□ -0.32
LSM1-204ENST00000522515 DUX5Q96PT3 197 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 BEX1Q9HBH7 125 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 TCF19Q9Y242 345 aa13.03□□□□□ -0.32
LSM1-204ENST00000522515 MOSP00540 346 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 RRASP10301 218 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 DHODHQ02127 395 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 ZNF585BQ52M93 769 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 PLET1Q6UQ28 207 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 TMEM219Q86XT9 240 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 OR5R1Q8NH85 324 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 ZFAND2BQ8WV99 257 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 FLYWCH2Q96CP2 140 aaKnown RBP13.02□□□□□ -0.33
LSM1-204ENST00000522515 ESM1Q9NQ30 184 aa13.02□□□□□ -0.33
LSM1-204ENST00000522515 A6NDX4 124 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 H0Y980 276 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 RBFOX2O43251 390 aaKnown RBP eCLIP13.01□□□□□ -0.33
LSM1-204ENST00000522515 PEX14O75381 377 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 OR5AC1P0C628 307 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 VSIG10L2P0DP72 767 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 TMEM11P17152 192 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 KIR2DS2P43631 304 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 TAS2R31P59538 309 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 PPP1R1AQ13522 171 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 TMEM177Q53S58 311 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 DHRS7BQ6IAN0 325 aaPredicted RBP13.01□□□□□ -0.33
LSM1-204ENST00000522515 Q8N6K4 173 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 TCTEX1D1Q8N7M0 179 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 OR4C13Q8NGP0 309 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 OR4S2Q8NH73 311 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 GALNT14Q96FL9 552 aa13.01□□□□□ -0.33
LSM1-204ENST00000522515 BTBD17A6NE02 478 aa13□□□□□ -0.33
LSM1-204ENST00000522515 DNAJC9-AS1A6NH13 148 aa13□□□□□ -0.33
LSM1-204ENST00000522515 OR4E1P0C645 316 aa13□□□□□ -0.33
LSM1-204ENST00000522515 VAMP1P23763 118 aa13□□□□□ -0.33
LSM1-204ENST00000522515 CNTFRP26992 372 aa13□□□□□ -0.33
LSM1-204ENST00000522515 LPAR6P43657 344 aa13□□□□□ -0.33
LSM1-204ENST00000522515 MECP2P51608 486 aaKnown RBP13□□□□□ -0.33
LSM1-204ENST00000522515 RPS16P62249 146 aaKnown RBP13□□□□□ -0.33
LSM1-204ENST00000522515 CBX3Q13185 183 aa13□□□□□ -0.33
LSM1-204ENST00000522515 SLC9A3R2Q15599 337 aa13□□□□□ -0.33
LSM1-204ENST00000522515 CD300LFQ8TDQ1 290 aa13□□□□□ -0.33
LSM1-204ENST00000522515 GLYATL2Q8WU03 294 aa13□□□□□ -0.33
LSM1-204ENST00000522515 MARVELD1Q9BSK0 173 aa13□□□□□ -0.33
LSM1-204ENST00000522515 CHIAQ9BZP6 476 aa13□□□□□ -0.33
LSM1-204ENST00000522515 ALX4Q9H161 411 aaPredicted RBP13□□□□□ -0.33
LSM1-204ENST00000522515 VPREB3Q9UKI3 123 aa13□□□□□ -0.33
LSM1-204ENST00000522515 KCNIP3Q9Y2W7 256 aa13□□□□□ -0.33
LSM1-204ENST00000522515 POMT1Q9Y6A1 747 aa13□□□□□ -0.33
LSM1-204ENST00000522515 SRRM4A7MD48 611 aaKnown RBP12.99□□□□□ -0.33
LSM1-204ENST00000522515 INMT-MINDY4F8WBC2 141 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 S1PR2O95136 353 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 UCP1P25874 307 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 F2RL1P55085 397 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 HILS1P60008 231 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 UBE2MP61081 183 aaKnown RBP12.99□□□□□ -0.33
LSM1-204ENST00000522515 TMEM86BQ8N661 226 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 HARBI1Q96MB7 349 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 TMEM222Q9H0R3 208 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 FAM212BQ9NTI7 297 aaPredicted RBP12.99□□□□□ -0.33
LSM1-204ENST00000522515 PRR13Q9NZ81 148 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 PITPNC1Q9UKF7 332 aa12.99□□□□□ -0.33
LSM1-204ENST00000522515 SHOXO15266 292 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 B3GALNT1O75752 331 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 HPRT1P00492 218 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 IFNA2P01563 188 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 IGKV1-39P01597 117 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 IGKV1D-39P04432 117 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 SERPINE2P07093 398 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 DHRS2Q13268 280 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 TMEM187Q14656 261 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 OXA1LQ15070 435 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 C4orf46Q504U0 113 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 OSR1Q8TAX0 266 aaPredicted RBP12.98□□□□□ -0.33
LSM1-204ENST00000522515 RBM14Q96PK6 669 aaKnown RBP12.98□□□□□ -0.33
LSM1-204ENST00000522515 SLC25A33Q9BSK2 321 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 PLEKHA2Q9HB19 425 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 PLSCR3Q9NRY6 295 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 C9orf170A2RU37 121 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 CHST1O43916 411 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 OR2F2O95006 317 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 SFT2D2O95562 160 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 IGLV2-23P01705 113 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 HLA-AP01891 365 aaKnown RBP12.98□□□□□ -0.33
LSM1-204ENST00000522515 MMDQ15546 238 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 C11orf88Q6PI97 169 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 VKORC1L1Q8N0U8 176 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 OR52B4Q8NGK2 314 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 LHFPL5Q8TAF8 219 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 CASTOR1Q8WTX7 329 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 RNF5Q99942 180 aa12.98□□□□□ -0.33
LSM1-204ENST00000522515 NIPBLQ6KC79 2804 aaeCLIP12.97□□□□□ -0.33
LSM1-204ENST00000522515 NCBP2LA6PVI3 153 aaKnown RBP12.97□□□□□ -0.33
LSM1-204ENST00000522515 CDS2O95674 445 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms