RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IGHV1-69-2A0A0G2JMI3 117 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 NPIPB4C9JG80 1138 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 NKX2-8O15522 239 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 GFRA1P56159 465 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 ORMDL2Q53FV1 153 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BLQ99880 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 NPFFR1Q9GZQ6 430 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 C5orf66Q9H5L9 145 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 A0A1W2PR80 420 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 TMPRSS2O15393 492 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BKO60814 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BJP06899 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BOP23527 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BBP33778 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 RND2P52198 227 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BDP58876 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BCP62807 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 FUT5Q11128 374 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 UNC119Q13432 240 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST2H2BEQ16778 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 FBXO46Q6PJ61 603 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BHQ93079 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 ZNF488Q96MN9 340 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BNQ99877 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST1H2BMQ99879 126 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 A0A0G2JMM0 328 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 A0A1W2PPB8 328 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 KIR3DP1A8MWS1 328 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 CD5LO43866 347 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 GZMMP51124 257 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 LOXL3P58215 753 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 HEPN1Q6WQI6 88 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 SPRED2Q7Z698 418 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 LINC01465Q8N7H1 131 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 MS4A4AQ96JQ5 239 aa9.67□□□□□ -0.86
LIMCH1-217ENST00000512946 A0A0G2JLM5 398 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 SPTY2D1-AS1A0A0U1RR47 76 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 C1QL3Q5VWW1 255 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 HIST3H2BBQ8N257 126 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 CD3EP07766 207 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 CCL20P78556 96 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 FAM159AQ6UWV7 190 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 TDHQ8IZJ6 230 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 GTF3AQ92664 365 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 DNAJC30Q96LL9 226 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 SSPNQ14714 243 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 OR5AN1Q8NGI8 311 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 C6orf106Q9H6K1 298 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 TCF19Q9Y242 345 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 ARID1AO14497 2285 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 FAM157AC9JC47 383 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 TMEM238C9JI98 176 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 J3QW42 95 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 OR9G9P0C7N8 305 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 OR52M1Q8NGK5 317 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 CACNG8Q8WXS5 425 aa9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 SF3B6Q9Y3B4 125 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-217ENST00000512946 A0A1B0GW64 132 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 FGF16O43320 207 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 PEX11BO96011 259 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 GPX1P07203 203 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 FOXA3P55318 350 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 KLHDC2Q9Y2U9 406 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 TRAV21A0A0B4J279 112 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 J3KRW8 73 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 PEX7O00628 323 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 TNFSF14O43557 240 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 ZNF56Q15929 161 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 RTN4RQ9BZR6 473 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 TNFRSF18Q9Y5U5 241 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 CCDC88AQ3V6T2 1871 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 DXOO77932 396 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 SPINK8P0C7L1 97 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 PAX1P15863 534 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 MPV17P39210 176 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 SOX8P57073 446 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 FAM106AQ4KMX7 169 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 SLC25A10Q9UBX3 287 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 COX11Q9Y6N1 276 aa9.65□□□□□ -0.86
LIMCH1-217ENST00000512946 PPIAL4EA0A075B759 164 aa9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 PPIAL4FP0DN26 164 aa9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 NANOS3P60323 173 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 RPL23P62829 140 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 DCAF10Q5QP82 559 aa9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 GOLT1AQ6ZVE7 132 aa9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 PPIAL4AQ9Y536 164 aa9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 XRN1Q8IZH2 1706 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-217ENST00000512946 TRGV8A0A0C4DH27 118 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 DEFB103AP81534 67 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 PSG6Q00889 435 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 SRSF1Q07955 248 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 TPTE2P1Q5T6R2 138 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 C9orf153Q5TBE3 101 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 ST6GALNAC3Q8NDV1 305 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 ARPC1AQ92747 370 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 WNT2BQ93097 391 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 KLK15Q9H2R5 256 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 CCL27Q9Y4X3 112 aa9.64□□□□□ -0.87
LIMCH1-217ENST00000512946 ATXN7O15265 892 aaPredicted RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms