RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 MSMPQ1L6U9 139 aa13.36□□□□□ -0.27
SQSTM1-213ENST00000510187 ALKBH6Q3KRA9 238 aa13.36□□□□□ -0.27
SQSTM1-213ENST00000510187 FAM90A2PQ658T7 463 aa13.36□□□□□ -0.27
SQSTM1-213ENST00000510187 TAF15Q92804 592 aaKnown RBP eCLIP13.36□□□□□ -0.274e-7■□□□□ 10.7
SQSTM1-213ENST00000510187 TMEM242Q9NWH2 141 aa13.36□□□□□ -0.27
SQSTM1-213ENST00000510187 DUSP13Q9UII6 198 aa13.36□□□□□ -0.27
SQSTM1-213ENST00000510187 C12orf77C9JDV5 145 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 IFNL4K9M1U5 179 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 PSPNO60542 156 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 KITLGP21583 273 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 IL2RGP31785 369 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 OR3A1P47881 315 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 ELOBQ15370 118 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 ZNF726P1Q15940 193 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 SPANXN5Q5MJ07 72 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 OR1L1Q8NH94 360 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 FAM216AQ8WUB2 273 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 OR4C12Q96R67 309 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 RBKSQ9H477 322 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 VAX2Q9UIW0 290 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 LAMP3Q9UQV4 416 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 MYO18BQ8IUG5 2567 aa13.35□□□□□ -0.27
SQSTM1-213ENST00000510187 DEFB108AA8MXU0 73 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 SHISA9B4DS77 424 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 SIAH2O43255 324 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 TGOLN2O43493 480 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 FBP1P09467 338 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 KLF3P57682 345 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 PAX5Q02548 391 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 TRAT1Q6PIZ9 186 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 ACP7Q6ZNF0 438 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 LRP11Q86VZ4 500 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 C11orf53Q8IXP5 236 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 DMRTC2Q8IXT2 367 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 OR13D1Q8NGV5 346 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 NINJ1Q92982 152 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 MRPL37Q9BZE1 423 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 OR2D2Q9H210 308 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 ZNF665Q9H7R5 613 aa13.34□□□□□ -0.27
SQSTM1-213ENST00000510187 MLNRO43193 412 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 HBZP02008 142 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 RPS10P46783 165 aaKnown RBP13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 SELENOVP59797 346 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 SRSF1Q07955 248 aaKnown RBP eCLIP13.33□□□□□ -0.271e-6■■□□□ 13.1
SQSTM1-213ENST00000510187 RBMS3Q6XE24 437 aaKnown RBP13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 UBALD1Q8TB05 177 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 Q8WTZ3 238 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 LURAP1Q96LR2 239 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 CIB3Q96Q77 187 aaPredicted RBP13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 TMEM147Q9BVK8 224 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 TMPRSS5Q9H3S3 457 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 VSIRQ9H7M9 311 aa13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.33□□□□□ -0.27
SQSTM1-213ENST00000510187 MAP1LC3B2A6NCE7 125 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 LRRC30A6NM36 301 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 ZNF727A8MUV8 499 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 RAB29O14966 203 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 CLDN1O95832 211 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 IGHV3-13P01766 116 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 MBP02144 154 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 NQO2P16083 231 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 IGFBP2P18065 325 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 RND2P52198 227 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 RAB11AP62491 216 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 MZT1Q08AG7 82 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 KIAA0141Q14154 515 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 LCN15Q6UWW0 184 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 ZNF66Q6ZN08 573 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 FAM222BQ8WU58 562 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 AGMATQ9BSE5 352 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 MAP1LC3BQ9GZQ8 125 aa13.33□□□□□ -0.28
SQSTM1-213ENST00000510187 IGLV3-9A0A075B6K5 115 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 UBE2L5PA0A1B0GUS4 154 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 A0A1B0GWJ7 208 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 ZFP92A6NM28 416 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 LY86O95711 162 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 CYB5R3P00387 301 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 PLAUP00749 431 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 OR4A8P0C604 315 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 PLA2G2AP14555 144 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 ADIPOQQ15848 244 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 SMIM21Q3B7S5 101 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 NANPQ8TBE9 248 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 NEUROG1Q92886 237 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 C5orf30Q96GV9 206 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 COQ2Q96H96 371 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 DOPEY1Q5JWR5 2465 aa13.32□□□□□ -0.28
SQSTM1-213ENST00000510187 FLNCQ14315 2725 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 VSTM5A8MXK1 200 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 HOXA5P20719 270 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 CEBPDP49716 269 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 RPL30P62888 115 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 WDR82Q6UXN9 313 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 CTDSP1Q9GZU7 261 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 MSL2Q9HCI7 577 aa13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 USP9XQ93008 2570 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-213ENST00000510187 ODAMA1E959 279 aa13.3□□□□□ -0.28
SQSTM1-213ENST00000510187 E7EQL1 145 aa13.3□□□□□ -0.28
SQSTM1-213ENST00000510187 RAMP3O60896 148 aa13.3□□□□□ -0.28
SQSTM1-213ENST00000510187 CLN5O75503 358 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms