RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 HPRT1P00492 218 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BJP06899 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 EGR1P18146 543 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BOP23527 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 S100A2P29034 98 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BBP33778 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BDP58876 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BCP62807 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 RPP30P78346 268 aaKnown RBP14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 NKX6-1P78426 367 aaPredicted RBP14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 ADIRFQ15847 76 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST2H2BEQ16778 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BHQ93079 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BNQ99877 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 HIST1H2BMQ99879 126 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 QTRT1Q9BXR0 403 aaKnown RBP14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 OR51M1Q9H341 326 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 GSN-AS1Q9NRJ2 163 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 IGKV1D-17A0A075B6S4 117 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 FAM90A9PA6NNJ1 464 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 MORN2Q502X0 79 aa14.92□□□□□ -0.02
CCHCR1-228ENST00000509552 YPEL1O60688 119 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 ACOT6Q3I5F7 207 aaPredicted RBP14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 PRAMEF5Q5TYX0 476 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 ALKBH2Q6NS38 261 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 OR4A16Q8NH70 328 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 RAB24Q969Q5 203 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 RPUSD4Q96CM3 377 aaKnown RBP14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 YPEL2Q96QA6 119 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 TRBV24-1A0A075B6N3 115 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 NDUFS6O75380 124 aaKnown RBP14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 OR9G9P0C7N8 305 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 S100PP25815 95 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 ZNF83P51522 516 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 ZADH2Q8N4Q0 377 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 OR4F5Q8NH21 305 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 PLPPR2Q96GM1 343 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 OR4F4Q96R69 305 aa14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 GAR1Q9NY12 217 aaKnown RBP14.91□□□□□ -0.02
CCHCR1-228ENST00000509552 PRR14LQ5THK1 2151 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 MBD3L4A6NDZ8 208 aaPredicted RBP14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 MBD3L3A6NE82 208 aaPredicted RBP14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 MBD3L5A6NJ08 208 aaPredicted RBP14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 C15orf62A8K5M9 175 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 M0R1X1 148 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 CFHR2P36980 270 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 ERVK-16P61578 105 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 LRP11Q86VZ4 500 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 MBD3L2Q8NHZ7 208 aaPredicted RBP14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 OR6C3Q9NZP0 311 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 MIOXQ9UGB7 285 aa14.9□□□□□ -0.02
CCHCR1-228ENST00000509552 SEC14L6B5MCN3 397 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 MDKP21741 143 aaPredicted RBP14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 BSXQ3C1V8 233 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 GCSAMQ8N6F7 178 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 DOCK11Q5JSL3 2073 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 M0R1B8 84 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 PPP1R2P9O14990 202 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 CD1BP29016 333 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 CDC34P49427 236 aaPredicted RBP14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 EDDM3BP56851 147 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 SPCS3P61009 180 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 CR1LQ2VPA4 569 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 AARDQ4LEZ3 155 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 SPNS3Q6ZMD2 512 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 SSX9Q7RTT3 188 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 OR2V2Q96R30 315 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 PARLQ9H300 379 aa14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 HEATR1Q9H583 2144 aaKnown RBP14.89□□□□□ -0.03
CCHCR1-228ENST00000509552 INTS1Q8N201 2190 aaKnown RBP14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 IGHV3OR15-7A0A075B7D8 119 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 ELOA3CA0A087WX78 387 aaPredicted RBP14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 RBFOX2O43251 390 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 SOX15O60248 233 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 PROP1O75360 226 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 IFNA10P01566 189 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 IGHV3-13P01766 116 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 CRYAAP02489 173 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 SEM1Q6ZVN7 128 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 S1PR3Q99500 378 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 SSX3Q99909 188 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 GGACTQ9BVM4 153 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 FAM234AQ9H0X4 552 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 WDR83OSQ9Y284 106 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 TRGC1P0CF51 173 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 PLA2G5P39877 138 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 KLF3P57682 345 aaPredicted RBP14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 MSMPQ1L6U9 139 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 TIMM23BQ5SRD1 257 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 MOGAT3Q86VF5 341 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 S100PBPQ96BU1 408 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 PARD6AQ9NPB6 346 aa14.88□□□□□ -0.03
CCHCR1-228ENST00000509552 F2RL2O00254 374 aa14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 PAGE4O60829 102 aa14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 CEACAM4O75871 244 aa14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 KIR2DS2P43631 304 aa14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 RPL23P62829 140 aaKnown RBP14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 TLE1Q04724 770 aa14.87□□□□□ -0.03
CCHCR1-228ENST00000509552 C16orf82Q7Z2V1 217 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms