RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 DEFA1P59665 94 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 DEFA3P59666 94 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 RPL30P62888 115 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 EBI3Q14213 229 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 HABP2Q14520 560 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 SURF2Q15527 256 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 TUSC1Q2TAM9 212 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 MZT2BQ6NZ67 158 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 C11orf88Q6PI97 169 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 TMED4Q7Z7H5 227 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 TBC1D26Q86UD7 250 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 SPAG16Q8N0X2 631 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 OR8H1Q8NGG4 311 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 OR4S2Q8NH73 311 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 CD300LFQ8TDQ1 290 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 ZFAND2BQ8WV99 257 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 HARBI1Q96MB7 349 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 TSNAXQ99598 290 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 RNF5Q99942 180 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 SLC25A21Q9BQT8 299 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 NPFFR1Q9GZQ6 430 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 SLC2A9Q9NRM0 540 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 SLC2A8Q9NY64 477 aa6.57□□□□□ -1.36
LIMCH1-206ENST00000505705 MPPED1O15442 326 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 NBR2O15453 112 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 HPRT1P00492 218 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 IGKV1-16P04430 117 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 SERPINE2P07093 398 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 AKR1C4P17516 323 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 F2RP25116 425 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 CNTFRP26992 372 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 LGALS7P47929 136 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 F2RL1P55085 397 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 RPL15P61313 204 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 RBMS2Q15434 407 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 VMA21Q3ZAQ7 101 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 OSR1Q8TAX0 266 aaPredicted RBP6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 TMEM158Q8WZ71 300 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 RITA1Q96K30 269 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 CLCC1Q96S66 551 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 AIFM2Q9BRQ8 373 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 PRSS22Q9GZN4 317 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 LIN7CQ9NUP9 197 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 GPR132Q9UNW8 380 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 KCNIP3Q9Y2W7 256 aa6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 SONP18583 2426 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-206ENST00000505705 FN1P02751 2386 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 C3orf85A0A1B0GTC6 90 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 FAM240BA0A1B0GVZ2 78 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 SH2D7A6NKC9 451 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 PLA2G10O15496 165 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 FGF16O43320 207 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 SLC25A17O43808 307 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 CHST1O43916 411 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 HRASP01112 189 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 LPAR6P43657 344 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 ERVK-16P61578 105 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 RND3P61587 244 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 BLCAPP62952 87 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 EIF4EBP1Q13541 118 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 TRIM16LQ309B1 348 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 FBLN7Q53RD9 439 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 TMEM177Q53S58 311 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 LIN54Q6MZP7 749 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 SSX9Q7RTT3 188 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 SGPP2Q8IWX5 399 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 Q8N6K4 173 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 TCTEX1D1Q8N7M0 179 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 Q8N9W7 124 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 DMBX1Q8NFW5 382 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 OR2T6Q8NHC8 308 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 ENKURQ8TC29 256 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 DDB2Q92466 427 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 TAF15Q92804 592 aaKnown RBP eCLIP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 RTBDNQ9BSG5 229 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 FBXL15Q9H469 300 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 C5orf66Q9H5L9 145 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 METTL1Q9UBP6 276 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 VSIG4Q9Y279 399 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 TLN2Q9Y4G6 2542 aa6.55□□□□□ -1.36
LIMCH1-206ENST00000505705 RRHO14718 337 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ARPC1BO15143 372 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 RAMP3O60896 148 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ATG12O94817 140 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ANXA3P12429 323 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 RPA2P15927 270 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 NQO2P16083 231 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 VAMP1P23763 118 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 RAG2P55895 527 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 TAS2R31P59538 309 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 GNB1P62873 340 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 FOXL1Q12952 345 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 ASAH1Q13510 395 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 PSG5Q15238 335 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 SP6Q3SY56 376 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 TREML4Q6UXN2 200 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 Q6ZSV7 163 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 VKORC1L1Q8N0U8 176 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 CENPSQ8N2Z9 138 aa6.54□□□□□ -1.36
LIMCH1-206ENST00000505705 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms