RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 LIN7CQ9NUP9 197 aaKnown RBP12.61□□□□□ -0.39
HPS4-216ENST00000493455 POMT1Q9Y6A1 747 aa12.61□□□□□ -0.39
HPS4-216ENST00000493455 SH2D7A6NKC9 451 aaPredicted RBP12.6□□□□□ -0.39
HPS4-216ENST00000493455 FAM90A9PA6NNJ1 464 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 CHST1O43916 411 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 GPR137BO60478 399 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 RAMP3O60896 148 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 TCRBP04435 133 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 RRASP10301 218 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 RPA2P15927 270 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 KIR2DS2P43631 304 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 RAB25P57735 213 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 UBA52P62987 128 aaKnown RBP12.6□□□□□ -0.39
HPS4-216ENST00000493455 DCTN2Q13561 401 aaKnown RBP12.6□□□□□ -0.39
HPS4-216ENST00000493455 PLGLAQ15195 96 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 TUSC1Q2TAM9 212 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 SP6Q3SY56 376 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 THNSL2Q86YJ6 484 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 CENPSQ8N2Z9 138 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 OR4S2Q8NH73 311 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 TAF15Q92804 592 aaKnown RBP eCLIP12.6□□□□□ -0.39
HPS4-216ENST00000493455 C20orf85Q9H1P6 137 aa12.6□□□□□ -0.39
HPS4-216ENST00000493455 C3orf85A0A1B0GTC6 90 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 VAMP1P23763 118 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 F2RP25116 425 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 SLC6A1P30531 599 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 LPAR6P43657 344 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 F2RL1P55085 397 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 RND3P61587 244 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 TAGLNQ01995 201 aaKnown RBP12.59□□□□□ -0.39
HPS4-216ENST00000493455 C9orf152Q5JTZ5 239 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 DHRS7BQ6IAN0 325 aaPredicted RBP12.59□□□□□ -0.39
HPS4-216ENST00000493455 SSX9Q7RTT3 188 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 NRARPQ7Z6K4 114 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 TMEM86BQ8N661 226 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 TMEM230Q96A57 120 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 RBM14Q96PK6 669 aaKnown RBP12.59□□□□□ -0.39
HPS4-216ENST00000493455 NAA60Q9H7X0 242 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 NUDT15Q9NV35 164 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 PRR13Q9NZ81 148 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 KIAA1456Q9P272 454 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 MOB4Q9Y3A3 225 aa12.59□□□□□ -0.39
HPS4-216ENST00000493455 FAM181BA6NEQ2 426 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 TRIM77I1YAP6 450 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 OR2F2O95006 317 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 S1PR2O95136 353 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 CRYBA1P05813 215 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 OR5AC1P0C628 307 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 ANXA7P20073 488 aaKnown RBP12.58□□□□□ -0.4
HPS4-216ENST00000493455 BRWD1-AS2P59051 145 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 EBI3Q14213 229 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 TRIM16LQ309B1 348 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 ARSJQ5FYB0 599 aaPredicted RBP12.58□□□□□ -0.4
HPS4-216ENST00000493455 SGPP2Q8IWX5 399 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 VKORC1L1Q8N0U8 176 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 OR4C13Q8NGP0 309 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 TP53RKQ96S44 253 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 CLCC1Q96S66 551 aa12.58□□□□□ -0.4
HPS4-216ENST00000493455 A0A0A6YYJ9 748 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 CRYM-AS1A6NIL9 109 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 NBR2O15453 112 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 SLC25A17O43808 307 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 SERPINE2P07093 398 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 RNASE1P07998 156 aaKnown RBP12.57□□□□□ -0.4
HPS4-216ENST00000493455 TAS2R31P59538 309 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 TMEM177Q53S58 311 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 Q8N6K4 173 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 CASTOR1Q8WTX7 329 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 TSNAXQ99598 290 aaKnown RBP12.57□□□□□ -0.4
HPS4-216ENST00000493455 FBXL15Q9H469 300 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 RAB18Q9NP72 206 aa12.57□□□□□ -0.4
HPS4-216ENST00000493455 H0Y980 276 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 HPRT1P00492 218 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 H2AFB2P0C5Z0 115 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 VSIG10L2P0DP72 767 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 SPNP16150 400 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 PPP1R1AQ13522 171 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 PSG5Q15238 335 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 VMA21Q3ZAQ7 101 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 C4orf46Q504U0 113 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 LIAT1Q6ZQX7 453 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 PRIMA1Q86XR5 153 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 DMBX1Q8NFW5 382 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 RNASE11Q8TAA1 199 aaKnown RBP12.56□□□□□ -0.4
HPS4-216ENST00000493455 OSR1Q8TAX0 266 aaPredicted RBP12.56□□□□□ -0.4
HPS4-216ENST00000493455 CD300LFQ8TDQ1 290 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 R3HDM4Q96D70 268 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 RASL11BQ9BPW5 248 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 PALMDQ9NP74 551 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 C1RLQ9NZP8 487 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 METTL1Q9UBP6 276 aaKnown RBP12.56□□□□□ -0.4
HPS4-216ENST00000493455 KCNIP3Q9Y2W7 256 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 NUBP2Q9Y5Y2 271 aa12.56□□□□□ -0.4
HPS4-216ENST00000493455 ZFHX3Q15911 3703 aa12.55□□□□□ -0.4
HPS4-216ENST00000493455 SRRM4A7MD48 611 aaKnown RBP12.55□□□□□ -0.4
HPS4-216ENST00000493455 CLDN34H7C241 214 aa12.55□□□□□ -0.4
HPS4-216ENST00000493455 G6PCP35575 357 aa12.55□□□□□ -0.4
HPS4-216ENST00000493455 ERVK-16P61578 105 aa12.55□□□□□ -0.4
HPS4-216ENST00000493455 ZNF585BQ52M93 769 aa12.55□□□□□ -0.4
HPS4-216ENST00000493455 TMEM128Q5BJH2 165 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms