RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CIB3Q96Q77 187 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 QTRT1Q9BXR0 403 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-208ENST00000492980 FAM90A9PA6NNJ1 464 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 PMS2P5A8MQ11 134 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 AARDQ4LEZ3 155 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 NCMAPQ5T1S8 102 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 S1PR3Q99500 378 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 EGLN1Q9GZT9 426 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 KIAA1456Q9P272 454 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 PRELID3BQ9Y3B1 194 aa17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 TLN1Q9Y490 2541 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-208ENST00000492980 SAA2-SAA4A0A096LPE2 208 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 UBE2L5PA0A1B0GUS4 154 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 TMPRSS2O15393 492 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 SAA2P0DJI9 122 aaPredicted RBP17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 KIR2DS2P43631 304 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 SPINK9Q5DT21 86 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 RARRES2Q99969 163 aa17.39■□□□□ 0.38
CCDC88B-208ENST00000492980 HCFC1P51610 2035 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 TRAV38-1A0A0B4J264 116 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 RBFOX3A6NFN3 312 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 CEBPZOSA8MTT3 80 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 VSTM5A8MXK1 200 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 E7EQL1 145 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 NFYBP25208 207 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 OR2B8PP59922 312 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 SFT2D1Q8WV19 159 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 ZNF251Q9BRH9 671 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 SLC35B3Q9H1N7 401 aa17.39■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM178BH3BS89 294 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 MMP23AO75900 390 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 PRAMEF5Q5TYX0 476 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 SSX9Q7RTT3 188 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 TAF15Q92804 592 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 NEUROG1Q92886 237 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 RNASE6Q93091 150 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 SMDT1Q9H4I9 107 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 VSIRQ9H7M9 311 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 RPRMQ9NS64 109 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 NDUFB7P17568 137 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM30BQ3MIR4 351 aa17.38■□□□□ 0.37
CCDC88B-208ENST00000492980 hADV38S2A0JD32 116 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 HBE1P02100 147 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 SERF2P84101 59 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 ATP6V1FQ16864 119 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 C1orf87Q8N0U7 546 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 VKORC1L1Q8N0U8 176 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 SLC25A10Q9UBX3 287 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 LINC00312Q9Y6C7 94 aa17.37■□□□□ 0.37
CCDC88B-208ENST00000492980 PPIAL4EA0A075B759 164 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 TRAV1-1A0A0B4J248 108 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 PPIAL4DF5H284 164 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 PPIAL4FP0DN26 164 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 NQO2P16083 231 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 CA7P43166 264 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 CASP6P55212 293 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 ERVK-16P61578 105 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 MRPS11P82912 194 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 LYG1Q8N1E2 194 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 KDF1Q8NAX2 398 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 OR4S2Q8NH73 311 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM147Q9BVK8 224 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 RPUSD1Q9UJJ7 312 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 PPIAL4AQ9Y536 164 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 DOCK11Q5JSL3 2073 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 FCN3O75636 299 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 THBS3P49746 956 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 GNG10P50151 68 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 OR4A16Q8NH70 328 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 RBMXL1Q96E39 390 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM106BQ9NUM4 274 aa17.36■□□□□ 0.37
CCDC88B-208ENST00000492980 RAB2AP61019 212 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 RPS16P62249 146 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 ZNF726P1Q15940 193 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 HAGHQ16775 308 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 OR10P1Q8NGE3 313 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 CCL17Q92583 94 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 PINX1Q96BK5 328 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM140Q9NV12 185 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 TIMM9Q9Y5J7 89 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 IFNA17P01571 189 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 OR13C7P0DN81 318 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 RELBQ01201 579 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 MEF2CQ06413 473 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 KLRB1Q12918 225 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 ZNF383Q8NA42 475 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 DYNLRB1Q9NP97 96 aa17.35■□□□□ 0.37
CCDC88B-208ENST00000492980 TRAV3A0A0B4J244 114 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 C15orf62A8K5M9 175 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 SPCS3P61009 180 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 ICAM4Q14773 271 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 TMEM41BQ5BJD5 291 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 SLC25A48Q6ZT89 311 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 CENPVQ7Z7K6 275 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 OR52E5Q8NH55 327 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 CLDND2Q8NHS1 167 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 AIFM2Q9BRQ8 373 aa17.34■□□□□ 0.37
CCDC88B-208ENST00000492980 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 TNFRSF13BO14836 293 aaPredicted RBP17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms