RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 HAND1O96004 215 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PTHP01270 115 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MT-ND4P03905 459 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TRGC2P03986 189 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MAS1P04201 325 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CTSDP07339 412 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CD14P08571 375 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ADRA2AP08913 450 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR4Q2P0C623 313 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TRGC1P0CF51 173 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 BCKDHAP12694 445 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MGMTP16455 207 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GABRG2P18507 467 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IDSP22304 550 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MMP11P24347 488 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MIPP30301 263 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 AGTR1P30556 359 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR10J1P30954 320 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SDC2P34741 201 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 BTCP35070 178 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CCR2P41597 374 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 DNASE1L1P49184 302 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SULT1A1P50225 295 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PPOXP50336 477 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF83P51522 516 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 DIO3P55073 304 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GNG3P63215 75 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CRADDP78560 199 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 LCN2P80188 198 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RHOGP84095 191 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CDK5Q00535 292 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PLCXD2Q0VAA5 305 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PJVKQ0ZLH3 352 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FUT7Q11130 342 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MAD2L1BPQ15013 274 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 KIAA0040Q15053 153 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RHEBQ15382 184 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HMGN3Q15651 99 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IL17AQ16552 155 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF699Q32M78 642 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TTLL9Q3SXZ7 439 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM128Q5BJH2 165 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 VAX1Q5SQQ9 334 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 LCE3EQ5T5B0 92 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SYPL2Q5VXT5 272 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SPATA31B1PQ5VZV4 182 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FAM219BQ5XKK7 198 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 AMMECR1LQ6DCA0 310 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 EIF5AL1Q6IS14 154 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FAM71F2Q6NXP2 309 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FAHD1Q6P587 224 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RPL22L1Q6P5R6 122 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RNASEKQ6P5S7 137 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TOMM20LQ6UXN7 152 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IL34Q6ZMJ4 242 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM91Q6ZNR0 172 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 COX15Q7KZN9 410 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 DPY19L4Q7Z388 723 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 DOLPP1Q86YN1 238 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM183AQ8IXX5 376 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SAXO1Q8IYX7 474 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF567Q8N184 647 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FAM71E2Q8N5Q1 922 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ARIH2OSQ8N7S6 290 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 C3orf56Q8N813 242 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF491Q8N8L2 437 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FADS6Q8N9I5 356 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FER1L6-AS1Q8NA97 138 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR4K5Q8NGD3 323 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR52L1Q8NGH7 329 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR10G9Q8NGN4 311 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR1P1Q8NH06 330 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR2AE1Q8NHA4 323 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FNDC9Q8TBE3 224 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MARCH1Q8TCQ1 289 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 HAVCR2Q8TDQ0 301 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CRYGNQ8WXF5 182 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 FRZBQ92765 325 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GLYATL1Q969I3 302 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 APH1AQ96BI3 265 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GALMQ96C23 342 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 SEH1LQ96EE3 360 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 LINC00167Q96N53 147 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 YPEL4Q96NS1 127 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 IP6K3Q96PC2 410 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 OR5B12Q96R08 314 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 TBX15Q96SF7 602 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 GPR22Q99680 433 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NAA38Q9BRA0 125 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 PAXXQ9BUH6 204 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ST6GALNAC5Q9BVH7 336 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CDCA4Q9BXL8 241 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RSPO3Q9BXY4 272 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 ULBP2Q9BZM5 246 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 NXF5Q9H1B4 397 aaKnown RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 BOLA2Q9H3K6 86 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 RBKSQ9H477 322 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CA10Q9NS85 328 aa1.57□□□□□ -2.16
HMGB1-208ENST00000490788 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.57□□□□□ -2.16
HMGB1-208ENST00000490788 MARCH5Q9NX47 278 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms