RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DDB2Q92466 427 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 COA4Q9NYJ1 87 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 CACNG5Q9UF02 275 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ITGB1BP2Q9UKP3 347 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ARHGAP32A7KAX9 2087 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 ITPR3Q14573 2671 aa11.6□□□□□ -0.55
CUX1-209ENST00000487284 KIAA1324LA8MWY0 1029 aaPredicted RBP11.59□□□□□ -0.55
CUX1-209ENST00000487284 SLC25A16P16260 332 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 HTR2BP41595 481 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 KIR2DS2P43631 304 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 THBS3P49746 956 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 POLR2GP62487 172 aaKnown RBP eCLIP11.59□□□□□ -0.55
CUX1-209ENST00000487284 IZUMO4Q1ZYL8 232 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 LYG1Q8N1E2 194 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 ST8SIA2Q92186 375 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 ADTRPQ96IZ2 230 aa11.59□□□□□ -0.55
CUX1-209ENST00000487284 TET2Q6N021 2002 aaPredicted RBP11.59□□□□□ -0.55
CUX1-209ENST00000487284 SPDEFO95238 335 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 PVALBP20472 110 aaPredicted RBP11.58□□□□□ -0.55
CUX1-209ENST00000487284 ERVFRD-1P60508 538 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 GNB2P62879 340 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 GPR157Q5UAW9 335 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 C11orf42Q8N5U0 333 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 LINC00311Q8N616 119 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 STOML3Q8TAV4 291 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 ZNF471Q9BX82 626 aaPredicted RBP11.58□□□□□ -0.55
CUX1-209ENST00000487284 CYTL1Q9NRR1 136 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 PRELID3BQ9Y3B1 194 aa11.58□□□□□ -0.55
CUX1-209ENST00000487284 CREBBPQ92793 2442 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 RPS10-NUDT3A0A1W2PQS6 291 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 TAAR5O14804 337 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 GPR137BO60478 399 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 HPRT1P00492 218 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 KRASP01116 189 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 RBP4P02753 201 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 IGHV1-8P0DP01 117 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 G6PCP35575 357 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 MIDNQ504T8 468 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 PRSS57Q6UWY2 283 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 ZNF833PQ6ZTB9 187 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 SCARB1Q8WTV0 552 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 Q96MF0 132 aa11.58□□□□□ -0.56
CUX1-209ENST00000487284 SSBP3Q9BWW4 388 aaPredicted RBP11.58□□□□□ -0.56
CUX1-209ENST00000487284 MYO9AB2RTY4 2548 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 A0A096LNT2 108 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 A0A1W2PPH5 198 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 FAM90A26D6RGX4 464 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 SSSCA1O60232 199 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 FCGR3BO75015 233 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 CLLU1Q5K131 121 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 ALKAL2Q6UX46 152 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 SLC7A5P1Q8MH63 180 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 LY6G5BQ8NDX9 201 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 R3HDM4Q96D70 268 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 PHYHIPLQ96FC7 376 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 S1PR3Q99500 378 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 MAGT1Q9H0U3 335 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 SESN1Q9Y6P5 492 aa11.57□□□□□ -0.56
CUX1-209ENST00000487284 MARCH11A6NNE9 402 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 C22orf46C9J442 243 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 J3QR06 171 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 WRBO00258 174 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 TOR1AO14656 332 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 ZFP36P26651 326 aaKnown RBP11.56□□□□□ -0.56
CUX1-209ENST00000487284 FAM71F2Q6NXP2 309 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 H2BFWTQ7Z2G1 175 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 OR8H3Q8N146 312 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 OR2C3Q8N628 320 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 ZNF383Q8NA42 475 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 OR4S2Q8NH73 311 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 OR9G1Q8NH87 305 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 RAB40CQ96S21 281 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 FOXC2Q99958 501 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 TMEM133Q9H2Q1 129 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 ZC4H2Q9NQZ6 224 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 LYRM2Q9NU23 88 aaPredicted RBP11.56□□□□□ -0.56
CUX1-209ENST00000487284 ZNRD1Q9P1U0 126 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 ZANQ9Y493 2812 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 AKAP9Q99996 3911 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 WNK2Q9Y3S1 2297 aa11.56□□□□□ -0.56
CUX1-209ENST00000487284 CR1P17927 2039 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 FLNAP21333 2647 aaKnown RBP11.55□□□□□ -0.56
CUX1-209ENST00000487284 PPIAL4CA0A0B4J2A2 164 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 FAM90A9PA6NNJ1 464 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 FAM157AC9JC47 383 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 RNF223E7ERA6 249 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 CHST1O43916 411 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 NXPH3O95157 252 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 TMEM50AO95807 157 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 PPIAL4GP0DN37 164 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 TPT1P13693 172 aaKnown RBP11.55□□□□□ -0.56
CUX1-209ENST00000487284 USF1P22415 310 aaPredicted RBP11.55□□□□□ -0.56
CUX1-209ENST00000487284 ZNF137PP52743 207 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 PAX9P55771 341 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 VAMP2P63027 116 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 WFDC11Q8NEX6 87 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 HSPB7Q9UBY9 170 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 FBXL17Q9UF56 701 aa11.55□□□□□ -0.56
CUX1-209ENST00000487284 A8MXK9 166 aa11.54□□□□□ -0.56
CUX1-209ENST00000487284 SYNGR2O43760 224 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 178.4 ms