RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 HSPA13P48723 471 aa16.54■□□□□ 0.24
USP40-215ENST00000484528 CBX3Q13185 183 aa16.54■□□□□ 0.24
USP40-215ENST00000484528 NR2C2APQ86WQ0 139 aa16.54■□□□□ 0.24
USP40-215ENST00000484528 TRDV1A0A1B0GX56 115 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 J3QRK9 145 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 TALDO1P37837 337 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 RTL8BQ17RB0 113 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 TMEM177Q53S58 311 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 IDO2Q6ZQW0 420 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 RCHY1Q96PM5 261 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 ATG5Q9H1Y0 275 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 RANGRFQ9HD47 186 aaPredicted RBP16.53■□□□□ 0.24
USP40-215ENST00000484528 COA4Q9NYJ1 87 aa16.53■□□□□ 0.24
USP40-215ENST00000484528 METTL21EPA6NDL7 271 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 H3BUA1 57 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 CRYZL1O95825 349 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 MRGPRG-AS1Q2M3A8 158 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 H1FOOQ8IZA3 346 aaPredicted RBP16.52■□□□□ 0.24
USP40-215ENST00000484528 PHB2Q99623 299 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 ELOVL1Q9BW60 279 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 STUB1Q9UNE7 303 aa16.52■□□□□ 0.24
USP40-215ENST00000484528 LINC00473A8K010 186 aa16.51■□□□□ 0.23
USP40-215ENST00000484528 DIRAS3O95661 229 aa16.51■□□□□ 0.23
USP40-215ENST00000484528 ZP3P21754 424 aa16.51■□□□□ 0.23
USP40-215ENST00000484528 ANKRD13BQ86YJ7 626 aa16.51■□□□□ 0.23
USP40-215ENST00000484528 ADAM30Q9UKF2 790 aa16.51■□□□□ 0.23
USP40-215ENST00000484528 A0A0G2JLM5 398 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 IGLV1-51P01701 117 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 TRBV12-3P01733 135 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 DUTP33316 252 aaKnown RBP16.5■□□□□ 0.23
USP40-215ENST00000484528 TNXAQ16473 311 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 VMA21Q3ZAQ7 101 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 DDB2Q92466 427 aa16.5■□□□□ 0.23
USP40-215ENST00000484528 TINAGL1Q9GZM7 467 aaPredicted RBP16.5■□□□□ 0.23
USP40-215ENST00000484528 ERICH4A6NGS2 130 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 MSGN1A6NI15 193 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 RBMXL2O75526 392 aaKnown RBP16.49■□□□□ 0.23
USP40-215ENST00000484528 RRASP10301 218 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 SYNJ2BPP57105 145 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 TAGLNQ01995 201 aaKnown RBP16.49■□□□□ 0.23
USP40-215ENST00000484528 CDNFQ49AH0 187 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 ACOT12Q8WYK0 555 aa16.49■□□□□ 0.23
USP40-215ENST00000484528 C3orf84H3BNL1 204 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 PSMB9P28065 219 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 GABARAPL2P60520 117 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 UBE2KP61086 200 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 DYRK1AQ13627 763 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 PRSS8Q16651 343 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 OR2B11Q5JQS5 317 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 Q6ZS49 121 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 NUDCD2Q8WVJ2 157 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 SRSF12Q8WXF0 261 aaKnown RBP16.48■□□□□ 0.23
USP40-215ENST00000484528 ADTRPQ96IZ2 230 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 TMEM68Q96MH6 324 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 ST6GALNAC5Q9BVH7 336 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 RAB26Q9ULW5 256 aa16.48■□□□□ 0.23
USP40-215ENST00000484528 MPPED1O15442 326 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 IGHV4-30-4P0DP06 118 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 NFYAP23511 347 aaPredicted RBP16.47■□□□□ 0.23
USP40-215ENST00000484528 DTYMKP23919 212 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 KLF5Q13887 457 aaPredicted RBP16.47■□□□□ 0.23
USP40-215ENST00000484528 C10orf55Q5SWW7 151 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 Q8N1Y9 231 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 TEX45Q8NA69 505 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 OR9G4Q8NGQ1 327 aa16.47■□□□□ 0.23
USP40-215ENST00000484528 TXNL4BQ9NX01 149 aaKnown RBP16.47■□□□□ 0.23
USP40-215ENST00000484528 PEF1Q9UBV8 284 aaKnown RBP16.47■□□□□ 0.23
USP40-215ENST00000484528 TMEM235A6NFC5 223 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 FCGR3BO75015 233 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 PRH1P02810 166 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 SAA1P0DJI8 122 aaPredicted RBP16.46■□□□□ 0.23
USP40-215ENST00000484528 GALP22466 123 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 AADACP22760 399 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 UBE2UQ5VVX9 321 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 ZNF343Q6P1L6 599 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 ADAD2Q8NCV1 583 aaKnown RBP16.46■□□□□ 0.23
USP40-215ENST00000484528 MUC7Q8TAX7 377 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 DCUN1D5Q9BTE7 237 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 ZMAT4Q9H898 229 aa16.46■□□□□ 0.23
USP40-215ENST00000484528 ZNF430Q9H8G1 570 aaPredicted RBP16.46■□□□□ 0.23
USP40-215ENST00000484528 NOTOA8MTQ0 251 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 OR9G9P0C7N8 305 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 ARL6IP1Q15041 203 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 HACD4Q5VWC8 232 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 IL34Q6ZMJ4 242 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 KCTD9Q7L273 389 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 SPARTQ8N0X7 666 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 ZNF645Q8N7E2 425 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 OSR1Q8TAX0 266 aaPredicted RBP16.45■□□□□ 0.22
USP40-215ENST00000484528 LGALS14Q8TCE9 139 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 DAPK2Q9UIK4 370 aa16.45■□□□□ 0.22
USP40-215ENST00000484528 IGKV1D-13A0A0B4J2D9 117 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 TUSC2O75896 110 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 BRI3O95415 125 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 IGKV1-13P0DP09 117 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 RPL30P62888 115 aaKnown RBP16.44■□□□□ 0.22
USP40-215ENST00000484528 RHOGP84095 191 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 RPEL1Q2QD12 228 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 CENPOQ9BU64 300 aa16.44■□□□□ 0.22
USP40-215ENST00000484528 RRP15Q9Y3B9 282 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms