RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TMEM11P17152 192 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 ANXA7P20073 488 aaKnown RBP9.81□□□□□ -0.84
SDC1-206ENST00000482879 BRWD1-AS2P59051 145 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 RPS16P62249 146 aaKnown RBP9.81□□□□□ -0.84
SDC1-206ENST00000482879 EBI3Q14213 229 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 RGS21Q2M5E4 152 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 SP6Q3SY56 376 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 TMEM128Q5BJH2 165 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 C11orf88Q6PI97 169 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 TCTEX1D1Q8N7M0 179 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 CD300LFQ8TDQ1 290 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 FLYWCH2Q96CP2 140 aaKnown RBP9.81□□□□□ -0.84
SDC1-206ENST00000482879 BEX1Q9HBH7 125 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 KCNIP3Q9Y2W7 256 aa9.81□□□□□ -0.84
SDC1-206ENST00000482879 TNCP24821 2201 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 A6NDX4 124 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 H0Y980 276 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 RBFOX2O43251 390 aaKnown RBP eCLIP9.8□□□□□ -0.84
SDC1-206ENST00000482879 RAMP3O60896 148 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 PEX14O75381 377 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 IGKV1-16P04430 117 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 OR5AC1P0C628 307 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 VSIG10L2P0DP72 767 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 LPAR6P43657 344 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 RAB25P57735 213 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 UBE2MP61081 183 aaKnown RBP9.8□□□□□ -0.84
SDC1-206ENST00000482879 DHODHQ02127 395 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 FBLN7Q53RD9 439 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 DHRS7BQ6IAN0 325 aaPredicted RBP9.8□□□□□ -0.84
SDC1-206ENST00000482879 CCBE1Q6UXH8 406 aaPredicted RBP9.8□□□□□ -0.84
SDC1-206ENST00000482879 TMEM219Q86XT9 240 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 OR4C13Q8NGP0 309 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 OR4S2Q8NH73 311 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 ZFAND2BQ8WV99 257 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 RITA1Q96K30 269 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 DUX5Q96PT3 197 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 TP53RKQ96S44 253 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 PITPNC1Q9UKF7 332 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 TCF19Q9Y242 345 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 POMT1Q9Y6A1 747 aa9.8□□□□□ -0.84
SDC1-206ENST00000482879 INMT-MINDY4F8WBC2 141 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 SHOXO15266 292 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 B3GALNT1O75752 331 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 SFT2D2O95562 160 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 HPRT1P00492 218 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 SERPINE2P07093 398 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 OR4E1P0C645 316 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 VAMP1P23763 118 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 SUPT4H1P63272 117 aaKnown RBP9.79□□□□□ -0.84
SDC1-206ENST00000482879 PPP1R1AQ13522 171 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 SLC9A3R2Q15599 337 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 C4orf46Q504U0 113 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 ZNF585BQ52M93 769 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 TMEM177Q53S58 311 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 TMEM86BQ8N661 226 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 Q8N6K4 173 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 GALNT14Q96FL9 552 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 RNF5Q99942 180 aa9.79□□□□□ -0.84
SDC1-206ENST00000482879 ALX4Q9H161 411 aaPredicted RBP9.79□□□□□ -0.84
SDC1-206ENST00000482879 FAM212BQ9NTI7 297 aaPredicted RBP9.79□□□□□ -0.84
SDC1-206ENST00000482879 C9orf170A2RU37 121 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 DNAJC9-AS1A6NH13 148 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 NCBP2LA6PVI3 153 aaKnown RBP9.78□□□□□ -0.84
SDC1-206ENST00000482879 SRRM4A7MD48 611 aaKnown RBP9.78□□□□□ -0.84
SDC1-206ENST00000482879 S1PR2O95136 353 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 IFNA2P01563 188 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 ANXA3P12429 323 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 UCP1P25874 307 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 CNTFRP26992 372 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 LGALS7P47929 136 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 F2RL1P55085 397 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 HILS1P60008 231 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 TMEM187Q14656 261 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 TRIM16LQ309B1 348 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 OSR1Q8TAX0 266 aaPredicted RBP9.78□□□□□ -0.84
SDC1-206ENST00000482879 CASTOR1Q8WTX7 329 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 GLYATL2Q8WU03 294 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 HARBI1Q96MB7 349 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 RBM14Q96PK6 669 aaKnown RBP9.78□□□□□ -0.84
SDC1-206ENST00000482879 JMJD8Q96S16 334 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 TSNAXQ99598 290 aaKnown RBP9.78□□□□□ -0.84
SDC1-206ENST00000482879 MARVELD1Q9BSK0 173 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 SLC25A33Q9BSK2 321 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 TMEM222Q9H0R3 208 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 PLEKHA2Q9HB19 425 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 ESM1Q9NQ30 184 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 C1RLQ9NZP8 487 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 VPREB3Q9UKI3 123 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 JMJD1CQ15652 2540 aa9.78□□□□□ -0.84
SDC1-206ENST00000482879 A0A0A6YYJ9 748 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 TCF21O43680 179 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 OR2F2O95006 317 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 DHFRP00374 187 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 HRASP01112 189 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 HLA-AP01891 365 aaKnown RBP9.77□□□□□ -0.85
SDC1-206ENST00000482879 IL5P05113 134 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 RPA2P15927 270 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 NQO2P16083 231 aa9.77□□□□□ -0.85
SDC1-206ENST00000482879 MECP2P51608 486 aaKnown RBP9.77□□□□□ -0.85
SDC1-206ENST00000482879 RAG2P55895 527 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms