RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 IGHV3-73A0A0B4J1V6 119 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 KPNA3O00505 521 aaPredicted RBP2.56□□□□□ -2
UPF3B-203ENST00000478840 TCRBP04435 133 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 MAP2K4P45985 399 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 HAAOP46952 286 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 OMPP47874 163 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 CCL7P80098 99 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 TNFAIP6P98066 277 aaPredicted RBP2.56□□□□□ -2
UPF3B-203ENST00000478840 PRDX4Q13162 271 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 SPOPLQ6IQ16 392 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 ALKAL1Q6UXT8 129 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 CCDC121Q6ZUS5 278 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 TRAPPC5Q8IUR0 188 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 OR4K13Q8NH42 304 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 RNASE6Q93091 150 aaKnown RBP2.56□□□□□ -2
UPF3B-203ENST00000478840 SLC35B4Q969S0 331 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 GNPNAT1Q96EK6 184 aaPredicted RBP2.56□□□□□ -2
UPF3B-203ENST00000478840 CAPZA3Q96KX2 299 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 KRTAP4-3Q9BYR4 195 aa2.56□□□□□ -2
UPF3B-203ENST00000478840 IGHV1-69-2A0A0G2JMI3 117 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 OR4C45A6NMZ5 311 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 C9JCJ5 164 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 G3V3Q6 166 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 ALOX5APP20292 161 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 IDH3GP51553 393 aaPredicted RBP2.55□□□□□ -2
UPF3B-203ENST00000478840 ZNF140P52738 457 aaPredicted RBP2.55□□□□□ -2
UPF3B-203ENST00000478840 TBPL1P62380 186 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 RANP62826 216 aaKnown RBP2.55□□□□□ -2
UPF3B-203ENST00000478840 CACNA1SQ13698 1873 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 TAF9Q16594 264 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 FAM201AQ5SY85 155 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 TMPPEQ6ZT21 453 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 NLRC5Q86WI3 1866 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 GPHB5Q86YW7 130 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 UMODL1-AS1Q8N2C9 162 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 CHMP6Q96FZ7 201 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 PRAP1Q96NZ9 151 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 MRPL16Q9NX20 251 aaKnown RBP2.55□□□□□ -2
UPF3B-203ENST00000478840 COQ4Q9Y3A0 265 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 PXMP4Q9Y6I8 212 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 HSPE1-MOB4S4R3N1 261 aa2.55□□□□□ -2
UPF3B-203ENST00000478840 ZNF638Q14966 1978 aaKnown RBP2.54□□□□□ -2
UPF3B-203ENST00000478840 DCCP43146 1447 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 TGIF2-C20orf24A0A0A6YYL0 155 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 A0A1B0GV50 99 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 A0A1B0GW54 56 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 OR11H12B2RN74 326 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 COX7A2LO14548 114 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 SOD1P00441 154 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 RWDD2BP57060 319 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 AP3S2P59780 193 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 ERVS71-1P61550 626 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 AESQ08117 197 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 TMEM31Q5JXX7 168 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 HCP5Q6MZN7 132 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 ZNF322Q6U7Q0 402 aaPredicted RBP2.54□□□□□ -2
UPF3B-203ENST00000478840 MSRB3Q8IXL7 192 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 LRRC25Q8N386 305 aaPredicted RBP2.54□□□□□ -2
UPF3B-203ENST00000478840 OR11H2Q8NH07 326 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 TAAR3PQ9P1P4 343 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 VPS29Q9UBQ0 182 aa2.54□□□□□ -2
UPF3B-203ENST00000478840 A0A087WUU8 490 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 IGHV3-15A0A0B4J1V0 119 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 CLDN24A6NM45 220 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 OR5K4A6NMS3 321 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 TMEM114B3SHH9 223 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 UBFD1O14562 309 aaKnown RBP2.53□□□□□ -2
UPF3B-203ENST00000478840 TNNC2P02585 160 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 LGALS3P17931 250 aaKnown RBP2.53□□□□□ -2
UPF3B-203ENST00000478840 RBM11P57052 281 aaKnown RBP2.53□□□□□ -2
UPF3B-203ENST00000478840 SPCS3P61009 180 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 PSG4Q00888 419 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 IFITM2Q01629 132 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 STX5Q13190 355 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 PMAIP1Q13794 54 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 CLDN22Q8N7P3 220 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 DAND5Q8N907 189 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 CNEP1R1Q8N9A8 125 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 LHFPL5Q8TAF8 219 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 TMEM222Q9H0R3 208 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.53□□□□□ -2
UPF3B-203ENST00000478840 AK3Q9UIJ7 227 aa2.53□□□□□ -2
UPF3B-203ENST00000478840 DSCAMO60469 2012 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 ABCC12Q96J65 1359 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 EEF1E1-BLOC1S5C9J1V9 151 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 IGHV1-69P01742 117 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 CTSGP08311 255 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 FAM228BP0C875 321 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SERPINB10P48595 397 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SRSF6Q13247 344 aaKnown RBP2.52□□□□□ -2.01
UPF3B-203ENST00000478840 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.52□□□□□ -2.01
UPF3B-203ENST00000478840 HIST2H3PS2Q5TEC6 136 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SPATA12Q7Z6I5 190 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SLC22A24Q8N4F4 322 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 OR1L8Q8NGR8 309 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 CLDND2Q8NHS1 167 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SGMS2Q8NHU3 365 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 RAB2BQ8WUD1 216 aa2.52□□□□□ -2.01
UPF3B-203ENST00000478840 C12orf43Q96C57 262 aaKnown RBP2.52□□□□□ -2.01
UPF3B-203ENST00000478840 SFRP2Q96HF1 295 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms