RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 DPRXA6NFQ7 191 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 LRRC30A6NM36 301 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 CEACAM18A8MTB9 384 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 IGHV1-46P01743 117 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 GLRXP35754 106 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM57AQ8TBR7 257 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 MAP1LC3B2A6NCE7 125 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A10PA6NDY2 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A18PA6NE21 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A16PA6NEW6 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 RBFOX3A6NFN3 312 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A20PA6NIJ5 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A8PA6NJQ4 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A7PA6NKC0 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 TMEM210A6NLX4 147 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A22PA8MWA6 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A12PA8MX19 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A5PA8MXJ8 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A23PA8MXZ1 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 DFFBO76075 338 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A15PP0C7V4 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A13PP0C7W8 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A14PP0C7W9 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 FAM90A24PP0C7X0 464 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 RND3P61587 244 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 EDARADDQ8WWZ3 215 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 MAP1LC3BQ9GZQ8 125 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 SLC25A10Q9UBX3 287 aaPredicted RBP11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 KRTAP27-1Q3LI81 207 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 NMSQ5H8A3 153 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF645Q8N7E2 425 aa11.44□□□□□ -0.58
CCDC88A-211ENST00000471947 DNASE2O00115 360 aaPredicted RBP11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 TNFRSF9Q07011 255 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 HES1Q14469 280 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 RAB40CQ96S21 281 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 RAB19A4D1S5 217 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 MGST3O14880 152 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 SPINK4O60575 86 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 OR2C1O95371 312 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 OR9G9P0C7N8 305 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 RPS23P62266 143 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 MZT1Q08AG7 82 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 TBR1Q16650 682 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF429Q86V71 674 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 TMEM56Q96MV1 263 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 EGLN1Q9GZT9 426 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 HIPK2Q9H2X6 1198 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 SIRT7Q9NRC8 400 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 CISD1Q9NZ45 108 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 TMEM56-RWDD3S4R434 201 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 DANCRP0C864 163 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 SPP1P10451 314 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF134P52741 427 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 SNRPEP62304 92 aaKnown RBP11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 IL15RAQ13261 267 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF146Q15072 292 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 BTNL8Q6UX41 500 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 LYPD2Q6UXB3 125 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 NIPSNAP3BQ9BS92 247 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 PLSCR2Q9NRY7 297 aa11.43□□□□□ -0.58
CCDC88A-211ENST00000471947 NAV2Q8IVL1 2488 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 WNK1Q9H4A3 2382 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 A0A1B0GU03 582 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 MLANAQ16655 118 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 C10orf55Q5SWW7 151 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 IL34Q6ZMJ4 242 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 GNPNAT1Q96EK6 184 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 S4R3C0 116 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF462Q96JM2 2506 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 PPIHO43447 177 aaKnown RBP11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 SEC11BP0C7V7 166 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 NQO2P16083 231 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 GZMHP20718 246 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 CHRNB4P30926 498 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 ID3Q02535 119 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 ZNF880Q6PDB4 577 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 MOB3BQ86TA1 216 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 SAT2Q96F10 170 aaPredicted RBP11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 NKX6-3A6NJ46 265 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 C1orf196B1AJZ1 125 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 OR10G4Q8NGN3 311 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 OR10G9Q8NGN4 311 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 OR10G7Q8NGN6 311 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 SLC35D1Q9NTN3 355 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 ONECUT1Q9UBC0 465 aa11.42□□□□□ -0.58
CCDC88A-211ENST00000471947 TNFRSF1AP19438 455 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 MIC13Q5XKP0 118 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 SLC35B3Q9H1N7 401 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 PARP11Q9NR21 331 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 NDUFB3O43676 98 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 COX5AP20674 150 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 HCP5Q6MZN7 132 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 KIR3DL3Q8N743 410 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 LAMP3Q9UQV4 416 aa11.41□□□□□ -0.58
CCDC88A-211ENST00000471947 MBD3L4A6NDZ8 208 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 MBD3L3A6NE82 208 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 MBD3L5A6NJ08 208 aaPredicted RBP11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 H3BTX0 84 aa11.4□□□□□ -0.58
CCDC88A-211ENST00000471947 PAX9P55771 341 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms