RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SURF2Q15527 256 aaPredicted RBP11.77□□□□□ -0.53
COL9A3-209ENST00000469852 KRTAP24-1Q3LI83 254 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 LIAT1Q6ZQX7 453 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 PDPNQ86YL7 162 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 ADAD2Q8NCV1 583 aaKnown RBP11.77□□□□□ -0.53
COL9A3-209ENST00000469852 TMEM230Q96A57 120 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 TSC22D3Q99576 134 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 C7orf50Q9BRJ6 194 aaKnown RBP11.77□□□□□ -0.53
COL9A3-209ENST00000469852 C1RLQ9NZP8 487 aa11.77□□□□□ -0.53
COL9A3-209ENST00000469852 NAP1L6A6NFF2 107 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 IGLV2-23P01705 113 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 RND3P61587 244 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 RPS16P62249 146 aaKnown RBP11.76□□□□□ -0.53
COL9A3-209ENST00000469852 BLCAPP62952 87 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 ASAH1Q13510 395 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 MMDQ15546 238 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 ABCA11PQ4W5N1 156 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 TMEM177Q53S58 311 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 CMTM1Q8IZ96 169 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 SPAG16Q8N0X2 631 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 C5orf56Q8N8D9 126 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 Q8N9W7 124 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 ZFAND1Q8TCF1 268 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 BORCS5Q969J3 196 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 ZNF486Q96H40 463 aaPredicted RBP11.76□□□□□ -0.53
COL9A3-209ENST00000469852 FLVCR2Q9UPI3 526 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 MOB4Q9Y3A3 225 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 PRELID3BQ9Y3B1 194 aa11.76□□□□□ -0.53
COL9A3-209ENST00000469852 NCBP2LA6PVI3 153 aaKnown RBP11.75□□□□□ -0.53
COL9A3-209ENST00000469852 MPPED1O15442 326 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 NDUFA3O95167 84 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 F2RP25116 425 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 ECI1P42126 302 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 CATR1Q13166 79 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 RTL8BQ17RB0 113 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 ZNF585BQ52M93 769 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 DHRS7BQ6IAN0 325 aaPredicted RBP11.75□□□□□ -0.53
COL9A3-209ENST00000469852 Q6ZSV7 163 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 FAM71E2Q8N5Q1 922 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 NPBQ8NG41 125 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 OR4C13Q8NGP0 309 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 FLYWCH2Q96CP2 140 aaKnown RBP11.75□□□□□ -0.53
COL9A3-209ENST00000469852 HARBI1Q96MB7 349 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 TP53RKQ96S44 253 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 FBXL15Q9H469 300 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 TPSG1Q9NRR2 321 aa11.75□□□□□ -0.53
COL9A3-209ENST00000469852 C14orf166Q9Y224 244 aaKnown RBP11.75□□□□□ -0.53
COL9A3-209ENST00000469852 CENPXA8MT69 81 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 NBR2O15453 112 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 S1PR2O95136 353 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 NDUFB6O95139 128 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 RRASP10301 218 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 TAGLNQ01995 201 aaKnown RBP11.74□□□□□ -0.53
COL9A3-209ENST00000469852 PSG5Q15238 335 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 C11orf88Q6PI97 169 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 C16orf82Q7Z2V1 217 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 VKORC1L1Q8N0U8 176 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 OR4S2Q8NH73 311 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 ZNF702PQ9H963 129 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 COPZ2Q9P299 210 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 SIGLEC9Q9Y336 463 aa11.74□□□□□ -0.53
COL9A3-209ENST00000469852 CRYM-AS1A6NIL9 109 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 RRHO14718 337 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 SHOXO15266 292 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 PLXNB1O43157 2135 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 SLC25A17O43808 307 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 IGKV1-39P01597 117 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 IGKV1D-39P04432 117 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 SLC6A1P30531 599 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 KIR2DS2P43631 304 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 LPAR6P43657 344 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 RBMS2Q15434 407 aaKnown RBP11.73□□□□□ -0.53
COL9A3-209ENST00000469852 MRGPRG-AS1Q2M3A8 158 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 TMEM95Q3KNT9 176 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 SP6Q3SY56 376 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 TMED4Q7Z7H5 227 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 ZFAND2BQ8WV99 257 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 SLC25A21Q9BQT8 299 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-209ENST00000469852 RAB18Q9NP72 206 aa11.73□□□□□ -0.53
COL9A3-209ENST00000469852 LIN7CQ9NUP9 197 aaKnown RBP11.73□□□□□ -0.53
COL9A3-209ENST00000469852 C3orf85A0A1B0GTC6 90 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 LINC01548A6NM66 108 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 FCN1O00602 326 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 RBFOX2O43251 390 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 FGF16O43320 207 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 CRYGBP07316 175 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 SAA1P0DJI8 122 aaPredicted RBP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 RPA2P15927 270 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 AKR1C4P17516 323 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 RPL15P61313 204 aaKnown RBP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 SUPT4H1P63272 117 aaKnown RBP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 CBX3Q13185 183 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 C5orf64Q2M2E5 130 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 CCDC71LQ8N9Z2 235 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 OR8H1Q8NGG4 311 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 OSR1Q8TAX0 266 aaPredicted RBP11.72□□□□□ -0.53
COL9A3-209ENST00000469852 TMEM158Q8WZ71 300 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 CLCC1Q96S66 551 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 RNF5Q99942 180 aa11.72□□□□□ -0.53
COL9A3-209ENST00000469852 HSPB9Q9BQS6 159 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms