RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DHRS12A0PJE2 317 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 C1orf196B1AJZ1 125 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 H7BYZ3 331 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 J3QR89 54 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 MYL12BO14950 172 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 BCL2L11O43521 198 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 SS18L1O75177 396 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 MPC2O95563 127 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 GPX1P07203 203 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 PAEPP09466 180 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 LINC00694P0DN24 101 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 BCL2P10415 239 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 CCR2P41597 374 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 LPAR6P43657 344 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 DEFA3P59666 94 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 FABP9Q0Z7S8 132 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 C16orf72Q14CZ0 275 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 BCL2L15Q5TBC7 163 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 GLT8D1Q68CQ7 371 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 CDC20BQ86Y33 519 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF695Q8IW36 515 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 OR51A4Q8NGJ6 313 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 FRZBQ92765 325 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 RBPMSQ93062 196 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 IGF2BP2-AS1Q96M15 143 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 PYGO2Q9BRQ0 406 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 C19orf24Q9BVV8 132 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 RNF122Q9H9V4 155 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 ARHGAP31Q2M1Z3 1444 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 THOC2Q8NI27 1593 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 MBD5Q9P267 1494 aa3.66□□□□□ -1.82
CCDC88A-210ENST00000468534 VIRMAQ69YN4 1812 aaKnown RBP3.65□□□□□ -1.82
CCDC88A-210ENST00000468534 TECPR2O15040 1411 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TROQ12816 1431 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 PRG4Q92954 1404 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV3OR16-12A0A075B7B8 117 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TRAV8-3A0A0A6YYJ7 113 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 LOC107984640A0A0U1RRK4 108 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM269A0A1B0GVZ9 245 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM72A0PK05 275 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TMEM212A6NML5 194 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 H0YJW9 148 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF780AO75290 641 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 IFNA7P01567 189 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 H2AFZP0C0S5 128 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 AKAIN1P0CW23 69 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 IGHV4-38-2P0DP08 117 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 NOVP48745 357 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 CCL23P55773 120 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 GFERP55789 205 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 NDUFA6P56556 154 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 MEF2BQ02080 365 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 HSD52Q0P140 79 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 KIAA0040Q15053 153 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TGIF1Q15583 401 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 C6orf52Q5T4I8 152 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 RPL22L1Q6P5R6 122 aaKnown RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 ZNF493Q6ZR52 646 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 CLEC20AQ6ZU45 233 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 LRRTM1Q86UE6 522 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 LHFPL1Q86WI0 220 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 RAB42Q8N4Z0 105 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 LINC00337Q8N6G1 96 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 ZIC4Q8N9L1 334 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 OR4K5Q8NGD3 323 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 LCN9Q8WX39 176 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM3DQ96BQ1 224 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 FXYD5Q96DB9 178 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 HIST1H4GQ99525 98 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 DEPPQ9NTK1 212 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 TCOF1Q13428 1488 aaKnown RBP3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 CCDC141Q6ZP82 1450 aa3.65□□□□□ -1.83
CCDC88A-210ENST00000468534 DISP2A7MBM2 1401 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 PNMA8CA0A1B0GUJ8 204 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 KLLNB2CW77 178 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 J3QQQ9 107 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 NPFFO15130 113 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 PSPHP1O15172 72 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 PGLYRP1O75594 196 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 TNFSF13O75888 250 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 DPM2O94777 84 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 TRBV12-3P01733 135 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 MAS1P04201 325 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 CECR9P0C854 216 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 IGLC6P0CF74 106 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 TRAPPC2P0DI81 140 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 TRAPPC2BP0DI82 140 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 P0DMU3 169 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM231AP0DMU4 169 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 FAM231CP0DMU5 169 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 LAMP1P11279 417 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 HLA-EP13747 358 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 GATA2P23769 480 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 CRHBPP24387 322 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 GADD45AP24522 165 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 S100A2P29034 98 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 UBE2NP61088 152 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 ERCC8Q13216 396 aa3.64□□□□□ -1.83
CCDC88A-210ENST00000468534 HERPUD1Q15011 391 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms