RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FABP9Q0Z7S8 132 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 ELOBQ15370 118 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 RBMS3Q6XE24 437 aaKnown RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 Q6ZS92 163 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 SLC35E3Q7Z769 313 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 FAM90A1Q86YD7 464 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 VKORC1L1Q8N0U8 176 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 TCTEX1D1Q8N7M0 179 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 Q8WTZ3 238 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 ITLN1Q8WWA0 313 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 EDARADDQ8WWZ3 215 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 LHX4Q969G2 390 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 TMEM147Q9BVK8 224 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 TMPRSS5Q9H3S3 457 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 SLC25A22Q9H936 323 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 LAMP3Q9UQV4 416 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 M0R1X1 148 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 UBE2CO00762 179 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 CFHR2P36980 270 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 FAM27E3Q08E93 113 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 ATP6V1FQ16864 119 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 C1orf185Q5T7R7 199 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 DUX4L9Q6RFH8 374 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 C1orf229Q6ZS94 237 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 CENPVQ7Z7K6 275 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 MRGPRGQ86SM5 289 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 RBMXL3Q8N7X1 1067 aaKnown RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 Q8TCH9 128 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 LEAP2Q969E1 77 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 MRPL37Q9BZE1 423 aaKnown RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 VAX2Q9UIW0 290 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 TIMM9Q9Y5J7 89 aa7.42□□□□□ -1.22
SYNE1-217ENST00000466159 TET2Q6N021 2002 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-217ENST00000466159 LINC00587B1AMM8 73 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 SLC31A2O15432 143 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 LHBP01229 141 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 IFNA17P01571 189 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 IGHV2-5P01817 119 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 DEFA4P12838 97 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 NQO2P16083 231 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 PPP1R35Q8TAP8 253 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 CIB3Q96Q77 187 aaPredicted RBP7.41□□□□□ -1.22
SYNE1-217ENST00000466159 JPT1Q9UK76 154 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 DSCAML1Q8TD84 2053 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 TGIF2-C20orf24A0A0A6YYL0 155 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 C15orf62A8K5M9 175 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 YPEL1O60688 119 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 EIF2S3P41091 472 aaKnown RBP7.41□□□□□ -1.22
SYNE1-217ENST00000466159 CR1LQ2VPA4 569 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 FAM209BQ5JX69 171 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 FFAR4Q5NUL3 377 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 OR10G9Q8NGN4 311 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 OR10G7Q8NGN6 311 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 YPEL2Q96QA6 119 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 NPCDR1Q9BY65 106 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 IFI27L2Q9H2X8 130 aa7.41□□□□□ -1.22
SYNE1-217ENST00000466159 IGLV3-9A0A075B6K5 115 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 KLK10O43240 276 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 HPRT1P00492 218 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 CD81P60033 236 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 TCF15Q12870 199 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 GATAD1Q8WUU5 269 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 P2RX4Q99571 388 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 COL25A1Q9BXS0 654 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-217ENST00000466159 CALYQ9NYX4 217 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 OR6C3Q9NZP0 311 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 METTL1Q9UBP6 276 aaKnown RBP7.4□□□□□ -1.22
SYNE1-217ENST00000466159 YLPM1P49750 1951 aaKnown RBP7.4□□□□□ -1.22
SYNE1-217ENST00000466159 ZGRF1Q86YA3 2104 aa7.4□□□□□ -1.22
SYNE1-217ENST00000466159 DMXL2Q8TDJ6 3036 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 TRAV3A0A0B4J244 114 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 F2RL2O00254 374 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 CYB5R3P00387 301 aaPredicted RBP7.4□□□□□ -1.23
SYNE1-217ENST00000466159 BMP5P22003 454 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 TIMP3P35625 211 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 GNB2P62879 340 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 RTP5Q14D33 572 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 VWC2Q2TAL6 325 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 PRAMEF5Q5TYX0 476 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 C1QL4Q86Z23 238 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 DEFB108BQ8NET1 73 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 SDF2L1Q9HCN8 221 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 SIRT7Q9NRC8 400 aa7.4□□□□□ -1.23
SYNE1-217ENST00000466159 GVINP1Q7Z2Y8 2422 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 RAI1Q7Z5J4 1906 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CTXND1A0A1B0GTU2 59 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 AP4M1O00189 453 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 IFNA1P01562 189 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CGB3P0DN86 165 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 CGB7P0DN87 165 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 MDKP21741 143 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 MEF2BQ02080 365 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 C17orf58Q2M2W7 97 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 ZNF674Q2M3X9 581 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 WDR25Q64LD2 544 aaPredicted RBP7.39□□□□□ -1.23
SYNE1-217ENST00000466159 SLC16A13Q7RTY0 426 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 TGIF2LYQ8IUE0 185 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 ZNF709Q8N972 641 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 OR4A16Q8NH70 328 aa7.39□□□□□ -1.23
SYNE1-217ENST00000466159 RAB24Q969Q5 203 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms