RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 RFPL4AL1F8VTS6 287 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TCF21O43680 179 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CD5LO43866 347 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CCNE2O96020 404 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV3-23P01764 117 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 MAS1P04201 325 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 PFN1P07737 140 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 TFPTP0C1Z6 253 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF688P0C7X2 276 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SPI1P17947 270 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OGNP20774 298 aaKnown RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RBX1P62877 108 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ATP5G2Q06055 141 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 BAMBIQ13145 260 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SCGB2B2Q4G0G5 96 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CLLU1OSQ5K130 101 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 ZFP1Q6P2D0 407 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CEMP1Q6PRD7 247 aaPredicted RBP1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 SHISA6Q6ZSJ9 500 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 CD200R1Q8TD46 325 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 C7orf33Q8WU49 177 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 MALSU1Q96EH3 234 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 GGTLC1Q9BX51 225 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 GTSF1LQ9H1H1 148 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 OR52D1Q9H346 318 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 RNF7Q9UBF6 113 aa1.74□□□□□ -2.13
CCDC88A-208ENST00000444458 PLCH2O75038 1416 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 PIK3C2GO75747 1445 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 PREX2Q70Z35 1606 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 A0A1W2PP18 115 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 BPGMP07738 259 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 FOLR2P14207 255 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 COL10A1Q03692 680 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 EBLN2Q6P2I7 272 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TOMM20LQ6UXN7 152 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 C1orf158Q8N1D5 194 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM256Q8N2U0 113 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 C14orf178Q8N769 122 aaPredicted RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 OR9Q1Q8NGQ5 310 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF675Q8TD23 568 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DNAJC30Q96LL9 226 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF778Q96MU6 729 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SERPINI1Q99574 410 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 OPRPNQ99935 248 aaPredicted RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 C1orf50Q9BV19 199 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 FGF23Q9GZV9 251 aaPredicted RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SH3BGRL3Q9H299 93 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SCRT2Q9NQ03 307 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ANAPC10Q9UM13 185 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ANKRD17O75179 2603 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 NID2Q14112 1375 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TONSLQ96HA7 1378 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TMED7-TICAM2A0A0A6YYA0 188 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TRAV26-2A0A0B4J265 109 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 IGHV1-69-2A0A0G2JMI3 117 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 RIIAD1A6NNX1 92 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DEGS1O15121 323 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TPST1O60507 370 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 IFNA7P01567 189 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 OR56A5P0C7T3 313 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TAF6P49848 677 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 RPS20P60866 119 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 CDC42P60953 191 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DAZ2Q13117 558 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 CASC10Q5T4H9 136 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 Q6ZRU5 148 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DAZ4Q86SG3 579 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ANGPTL5Q86XS5 388 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 IFT20Q8IY31 132 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 Q8N1X5 172 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZIC4Q8N9L1 334 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 OR2M7Q8NG81 312 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DERL3Q96Q80 235 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SEC22CQ9BRL7 303 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 MS4A8Q9BY19 250 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 VCXQ9H320 206 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 GPR84Q9NQS5 396 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DAZ1Q9NQZ3 744 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DAZ3Q9NR90 486 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 NEUROG3Q9Y4Z2 214 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 HFM1A2PYH4 1435 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 BCL9O00512 1426 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 MIA2Q96PC5 1412 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 C2orf16Q68DN1 1984 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 NCOA2Q15596 1464 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TMEM72A0PK05 275 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 NDUFAF8A1L188 74 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 INMT-MINDY4F8WBC2 141 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 UPK1AO00322 258 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 AMBPP02760 352 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 DBIP07108 87 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 PPIBP23284 216 aaKnown RBP1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 CA7P43166 264 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 SERPINB10P48595 397 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 PIGPP57054 158 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 BTN1A1Q13410 526 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 GLYATQ6IB77 296 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 TCF24Q7RTU0 167 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF525Q8N782 197 aa1.73□□□□□ -2.13
CCDC88A-208ENST00000444458 ZNF709Q8N972 641 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms