RNA–Protein interactions for RNA: ENST00000431640.5

DDX56-204, Transcript of DEAD-box helicase 56, humanhuman

TSL 1 (best) BASIC

Gene DDX56, Length 1,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-204ENST00000431640 C1orf87Q8N0U7 546 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 PINX1Q96BK5 328 aaKnown RBP10.62□□□□□ -0.71
DDX56-204ENST00000431640 R3HDM4Q96D70 268 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 S1PR3Q99500 378 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 ESRP2Q9H6T0 727 aaKnown RBP10.62□□□□□ -0.71
DDX56-204ENST00000431640 LINC00574Q9H8X3 128 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 GFOD1Q9NXC2 390 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 KIAA1456Q9P272 454 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 TIMM9Q9Y5J7 89 aa10.62□□□□□ -0.71
DDX56-204ENST00000431640 TRAV38-1A0A0B4J264 116 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 RBFOX3A6NFN3 312 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 NKX6-3A6NJ46 265 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 FAM74A7A6NL05 159 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 MARCH11A6NNE9 402 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 C9JQL5 133 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 M0R1X1 148 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 PPIHO43447 177 aaKnown RBP10.61□□□□□ -0.71
DDX56-204ENST00000431640 RBMXL2O75526 392 aaKnown RBP10.61□□□□□ -0.71
DDX56-204ENST00000431640 RPP30P78346 268 aaKnown RBP10.61□□□□□ -0.71
DDX56-204ENST00000431640 FBXL19-AS1Q494R0 122 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 AARDQ4LEZ3 155 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 FAM74A3Q4VXF1 159 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 NCR3LG1Q68D85 454 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 OR10A7Q8NGE5 316 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 DTD1Q8TEA8 209 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 ADTRPQ96IZ2 230 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 GAFA1Q96PS6 74 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 FBXO7Q9Y3I1 522 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 HCFC1P51610 2035 aa10.61□□□□□ -0.71
DDX56-204ENST00000431640 USP9XQ93008 2570 aaPredicted RBP10.61□□□□□ -0.71
DDX56-204ENST00000431640 hADV38S2A0JD32 116 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 FCGR3BO75015 233 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 ERVK-16P61578 105 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 RUNX1Q01196 453 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 SLC38A11Q08AI6 406 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 ARL16Q0P5N6 197 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 FAM201AQ5SY85 155 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 SP5Q6BEB4 398 aaPredicted RBP10.6□□□□□ -0.71
DDX56-204ENST00000431640 SPSB3Q6PJ21 355 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 DEFB108BQ8NET1 73 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 OR10P1Q8NGE3 313 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 OR52E5Q8NH55 327 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 SFT2D1Q8WV19 159 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 OR4C12Q96R67 309 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 CLCC1Q96S66 551 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 CCL13Q99616 98 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 ABHD14AQ9BUJ0 271 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 WDR61Q9GZS3 305 aaKnown RBP10.6□□□□□ -0.71
DDX56-204ENST00000431640 IDI2-AS1Q9NZ38 188 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 NDRG3Q9UGV2 375 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 DIDO1Q9BTC0 2240 aaKnown RBP10.6□□□□□ -0.71
DDX56-204ENST00000431640 CEBPZOSA8MTT3 80 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 PROP1O75360 226 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 NQO2P16083 231 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 NPBWR1P48145 328 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 THBS3P49746 956 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 ZNF134P52741 427 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 SPCS3P61009 180 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 GNB2P62879 340 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 MEF2CQ06413 473 aaPredicted RBP10.6□□□□□ -0.71
DDX56-204ENST00000431640 CENPVQ7Z7K6 275 aaPredicted RBP10.6□□□□□ -0.71
DDX56-204ENST00000431640 HAPLN4Q86UW8 402 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 OR4A16Q8NH70 328 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 MBD3L1Q8WWY6 194 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 TMEM147Q9BVK8 224 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 IFI27L2Q9H2X8 130 aa10.6□□□□□ -0.71
DDX56-204ENST00000431640 TENM4Q6N022 2769 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 H7C2Y5 167 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 GPR37O15354 613 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 F12P00748 615 aaPredicted RBP10.59□□□□□ -0.71
DDX56-204ENST00000431640 MBP02144 154 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 GYPAP02724 150 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 CCL8P80075 99 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 OR4S2Q8NH73 311 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 CA5BP1Q8WTZ4 195 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 TAF15Q92804 592 aaKnown RBP eCLIP10.59□□□□□ -0.71
DDX56-204ENST00000431640 WFIKKN1Q96NZ8 548 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 MS4A5Q9H3V2 200 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 SMCO4Q9NRQ5 59 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 RFNGQ9Y644 331 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 CACNA1DQ01668 2161 aa10.59□□□□□ -0.71
DDX56-204ENST00000431640 COL12A1Q99715 3063 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 PPIAL4EA0A075B759 164 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 MEX3AA1L020 520 aaKnown RBP10.58□□□□□ -0.72
DDX56-204ENST00000431640 PPIAL4DF5H284 164 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 C19orf84I3L1E1 186 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 SOX15O60248 233 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 HSPB1P04792 205 aaKnown RBP10.58□□□□□ -0.72
DDX56-204ENST00000431640 PPIAL4FP0DN26 164 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 PDLIM3Q53GG5 364 aaPredicted RBP10.58□□□□□ -0.72
DDX56-204ENST00000431640 KHDC3LQ587J8 217 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 TMEM41BQ5BJD5 291 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 CT45A1Q5HYN5 189 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 SOHLH1Q5JUK2 328 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 NCMAPQ5T1S8 102 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 PRAMEF5Q5TYX0 476 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 OR8G2PQ6IF36 304 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 CT45A3Q8NHU0 189 aa10.58□□□□□ -0.72
DDX56-204ENST00000431640 RNASE6Q93091 150 aaKnown RBP10.58□□□□□ -0.72
DDX56-204ENST00000431640 AIFM2Q9BRQ8 373 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms