RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CHRNA7P36544 502 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 CEBPDP49716 269 aaPredicted RBP9.46□□□□□ -0.9
USP4-205ENST00000431357 SOX8P57073 446 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 AESQ08117 197 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 ACOT6Q3I5F7 207 aaPredicted RBP9.46□□□□□ -0.9
USP4-205ENST00000431357 Q6ZT83 130 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 C11orf53Q8IXP5 236 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 NPCDR1Q9BY65 106 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 PARLQ9H300 379 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 SLC25A22Q9H936 323 aa9.46□□□□□ -0.9
USP4-205ENST00000431357 FAM90A9PA6NNJ1 464 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 CD55P08174 381 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 ADH4P08319 380 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 MDKP21741 143 aaPredicted RBP9.45□□□□□ -0.9
USP4-205ENST00000431357 MPV17P39210 176 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 CDKN1BP46527 198 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 GABRA2P47869 451 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 PAX5Q02548 391 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 TMEM249Q2WGJ8 235 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 RNFT1Q5M7Z0 435 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 GFI1BQ5VTD9 330 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 FAM214BQ7L5A3 538 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 RPUSD4Q96CM3 377 aaKnown RBP9.45□□□□□ -0.9
USP4-205ENST00000431357 NEIL1Q96FI4 390 aaPredicted RBP9.45□□□□□ -0.9
USP4-205ENST00000431357 COQ2Q96H96 371 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 LOXL4Q96JB6 756 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 DIRC2Q96SL1 478 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 CLCF1Q9UBD9 225 aa9.45□□□□□ -0.9
USP4-205ENST00000431357 MLNRO43193 412 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 LYZL6O75951 148 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 FABP4P15090 132 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 KITLGP21583 273 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 GALR1P47211 349 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 BRWD1-AS2P59051 145 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 HTD2P86397 168 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 MZT1Q08AG7 82 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 SMIM21Q3B7S5 101 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 TMEM183AQ8IXX5 376 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 C1orf162Q8NEQ5 155 aaPredicted RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 OR51G1Q8NGK1 321 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 OR4F5Q8NH21 305 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 OR4X1Q8NH49 305 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 MRGPRDQ8TDS7 321 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 OR4F4Q96R69 305 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 SH3BGRL2Q9UJC5 107 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 MED12LQ86YW9 2145 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 PPP5D1E7EU14 171 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 DVL1O14640 695 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 WNT9BO14905 357 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 SPINT2O43291 252 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 RBMXL2O75526 392 aaKnown RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 HRASP01112 189 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 IGKV3-15P01624 115 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 IGHG3P01860 377 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 SRP14P37108 136 aaKnown RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 FAM3BP58499 235 aaPredicted RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 C4orf17Q53FE4 359 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 COA6Q5JTJ3 125 aaKnown RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 WDR82Q6UXN9 313 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 UNQ6494/PRO21346Q6UXR6 183 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 C1orf174Q8IYL3 243 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 BTF3L4Q96K17 158 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 PACRGQ96M98 296 aaPredicted RBP9.44□□□□□ -0.9
USP4-205ENST00000431357 GUCD1Q96NT3 240 aa9.44□□□□□ -0.9
USP4-205ENST00000431357 IGHV3-64DA0A0J9YX35 117 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 CDC34P49427 236 aaPredicted RBP9.43□□□□□ -0.9
USP4-205ENST00000431357 TFF3Q07654 80 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 PDZD11Q5EBL8 140 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 ZNF826PQ6ZT77 177 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 RAB1CQ92928 201 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 ZDHHC16Q969W1 377 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 ACY3Q96HD9 319 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 SNX22Q96L94 193 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 WFIKKN1Q96NZ8 548 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 HIST1H2BLQ99880 126 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 PDE6DO43924 150 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 TIMM8AO60220 97 aaPredicted RBP9.43□□□□□ -0.9
USP4-205ENST00000431357 MPDU1O75352 247 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 WISP2O76076 250 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 GYPAP02724 150 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 TDGF1P3P51864 188 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 COL10A1Q03692 680 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 GUSBP1Q15486 140 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 ZNF718Q3SXZ3 478 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 BTNL3Q6UXE8 466 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 SMIM15Q7Z3B0 74 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 RNASEH2CQ8TDP1 164 aaKnown RBP9.43□□□□□ -0.9
USP4-205ENST00000431357 PRO1933Q9H354 126 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 WDR83OSQ9Y284 106 aa9.43□□□□□ -0.9
USP4-205ENST00000431357 DNAJC13O75165 2243 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 HMGB3O15347 200 aaKnown RBP9.42□□□□□ -0.9
USP4-205ENST00000431357 PAGE4O60829 102 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 HPRT1P00492 218 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 TYMSP04818 313 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 CD99P14209 185 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 HNF1AP20823 631 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 GCH1P30793 250 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 JOSD1Q15040 202 aaPredicted RBP9.42□□□□□ -0.9
USP4-205ENST00000431357 PLA2G2CQ5R387 149 aa9.42□□□□□ -0.9
USP4-205ENST00000431357 KCNIP4Q6PIL6 250 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms