RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 LINC01560Q8TB33 94 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 LZICQ8WZA0 190 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 FRZBQ92765 325 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 SLC25A46Q96AG3 418 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 ROPN1LQ96C74 230 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CMBLQ96DG6 245 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CCL13Q99616 98 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 NDFIP1Q9BT67 221 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 PBDC1Q9BVG4 233 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CCDC90BQ9GZT6 254 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 FAM107BQ9H098 131 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 ABCG5Q9H222 651 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 LYRM2Q9NU23 88 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 UQCC1Q9NVA1 299 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 TMEM38BQ9NVV0 291 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CMTM6Q9NX76 183 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 SSR3Q9UNL2 185 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 CHD2O14647 1828 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 ARAP3Q8WWN8 1544 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 TET2Q6N021 2002 aaPredicted RBP3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 MIA3Q5JRA6 1907 aa3.27□□□□□ -1.89
CCDC88A-206ENST00000430086 OR5H14A6NHG9 310 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF729A6NN14 1252 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF850A8MQ14 1090 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 NDUFC2O95298 119 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GPR75O95800 540 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 ATP6V0CP27449 155 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 PPP1CCP36873 323 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GTF2A1P52655 376 aaPredicted RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GRK1Q15835 563 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 KLHL12Q53G59 568 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GLT8D1Q68CQ7 371 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 DCUN1D2Q6PH85 259 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 DAZ4Q86SG3 579 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 KRTCAP2Q8N6L1 136 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 OR13D1Q8NGV5 346 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 ACOT12Q8WYK0 555 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GPR146Q96CH1 333 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 PEBP4Q96S96 227 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 TBX5Q99593 518 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 RNASE7Q9H1E1 156 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 SH3BGRL3Q9H299 93 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 CXorf21Q9HAI6 301 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GPR84Q9NQS5 396 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 DAZ1Q9NQZ3 744 aaKnown RBP3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF355PQ9NSJ1 428 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 RWDD2AQ9UIY3 292 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 GINS2Q9Y248 185 aa3.26□□□□□ -1.89
CCDC88A-206ENST00000430086 NUP155O75694 1391 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 DHX57Q6P158 1386 aaKnown RBP3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 TONSLQ96HA7 1378 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 IGHV3OR15-7A0A075B7D8 119 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 TRAPPC13A5PLN9 417 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 IZUMO1RA6ND01 250 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 OR7C2O60412 319 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 CCNE2O96020 404 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 C8GP07360 202 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 CD7P09564 240 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 SPI1P17947 270 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 OPRM1P35372 400 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 AKR1C2P52895 323 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 LINC00313P59037 77 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 DEFB116Q30KQ4 102 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF678Q5SXM1 525 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 FAM104BQ5XKR9 115 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 SLC22A24Q8N4F4 322 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 OR4A5Q8NH83 315 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 OR10J5Q8NHC4 309 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 RTN4IP1Q8WWV3 396 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 BORCS5Q969J3 196 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 GNPNAT1Q96EK6 184 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 NMNAT3Q96T66 252 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 SHANK2-AS3Q9BTD1 123 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 SCRT1Q9BWW7 348 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 ALX4Q9H161 411 aaPredicted RBP3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 PARVBQ9HBI1 364 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 TAAR3PQ9P1P4 343 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 SS18L2Q9UHA2 77 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 PRNDQ9UKY0 176 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 TMEM56-RWDD3S4R434 201 aa3.25□□□□□ -1.89
CCDC88A-206ENST00000430086 hCG_1818297A0A087WSY0 165 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 IGHV3-21A0A0B4J1V1 117 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 IGHV3-43A0A0B4J1X8 118 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 MAP1LC3B2A6NCE7 125 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 A8MT66 165 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 H7C1C5 153 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 RBFOX2O43251 390 aaKnown RBP eCLIP3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 ZNF207O43670 478 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 ORC5O43913 435 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 FSTL3O95633 263 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 NRASP01111 189 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 HRASP01112 189 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 KRASP01116 189 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 RBP1P09455 135 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 RWDD2BP57060 319 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 LCN6P62502 163 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 PDGFRLQ15198 375 aa3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 IBA57Q5T440 356 aaKnown RBP3.24□□□□□ -1.89
CCDC88A-206ENST00000430086 C9orf64Q5T6V5 341 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms