RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RPL30P62888 115 aaKnown RBP8.93□□□□□ -0.98
CUX1-205ENST00000425244 SPINK9Q5DT21 86 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 DPPA3Q6W0C5 159 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 Q6ZR03 302 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 MISP3Q96FF7 219 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 PLPPR2Q96GM1 343 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 GPR61Q9BZJ8 451 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 TMPRSS5Q9H3S3 457 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 METRNQ9UJH8 293 aa8.93□□□□□ -0.98
CUX1-205ENST00000425244 A0A0G2JNJ9 132 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 PTBP3O95758 552 aaKnown RBP8.92□□□□□ -0.98
CUX1-205ENST00000425244 CD200P41217 278 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 LINC00205P59089 165 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 SLC38A11Q08AI6 406 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 EDDM3AQ14507 147 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 ZNF474Q6S9Z5 364 aaPredicted RBP8.92□□□□□ -0.98
CUX1-205ENST00000425244 SSX7Q7RTT5 188 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 ZNF645Q8N7E2 425 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 TVP23CQ96ET8 276 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 C5orf30Q96GV9 206 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 RBKSQ9H477 322 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 CLN8Q9UBY8 286 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 Q9UFV3 132 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 ROS1P08922 2347 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 LOC102723971A0A1B0GUV8 181 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 HMGB3O15347 200 aaKnown RBP8.92□□□□□ -0.98
CUX1-205ENST00000425244 S1PR2O95136 353 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 CGAP01215 116 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 CECR9P0C854 216 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 GLIPR1P48060 266 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 RBPJQ06330 500 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 FAM27E3Q08E93 113 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 ZNF726P1Q15940 193 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 C11orf53Q8IXP5 236 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 WDR31Q8NA23 367 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 COQ2Q96H96 371 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 RCC1LQ96I51 464 aaKnown RBP8.92□□□□□ -0.98
CUX1-205ENST00000425244 DCTN5Q9BTE1 182 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 CXXC4Q9H2H0 198 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 PRORYQ9H606 182 aa8.92□□□□□ -0.98
CUX1-205ENST00000425244 OR5H1A6NKK0 313 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 C17orf98A8MV24 154 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 CD55P08174 381 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 TIMP3P35625 211 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 COL10A1Q03692 680 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 TNFRSF9Q07011 255 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 LRRC75BQ2VPJ9 315 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 KHDC3LQ587J8 217 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 WDR82Q6UXN9 313 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 ACP7Q6ZNF0 438 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 ZNF383Q8NA42 475 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 MUCL1Q96DR8 90 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 OOEPA6NGQ2 149 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 IFNA17P01571 189 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 BCL2P10415 239 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 GCH1P30793 250 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 MSMO1Q15800 293 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 ZNF674Q2M3X9 581 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 WDR61Q9GZS3 305 aaKnown RBP8.91□□□□□ -0.98
CUX1-205ENST00000425244 HES4Q9HCC6 221 aa8.91□□□□□ -0.98
CUX1-205ENST00000425244 CEBPZOSA8MTT3 80 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 IGKV3-15P01624 115 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 WNT2P09544 360 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 CATR1Q13166 79 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 SP5Q6BEB4 398 aaPredicted RBP8.9□□□□□ -0.98
CUX1-205ENST00000425244 HEPN1Q6WQI6 88 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 BHLHA15Q7RTS1 189 aaPredicted RBP8.9□□□□□ -0.98
CUX1-205ENST00000425244 OR13A1Q8NGR1 328 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 S100PBPQ96BU1 408 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 DUSP13Q9UII6 198 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 PSG11Q9UQ72 335 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 ODAMA1E959 279 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 MAP1LC3B2A6NCE7 125 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 CXorf65A6NEN9 183 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 IGHV3-13P01766 116 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 IGHV3-7P01780 117 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 IGHV2-5P01817 119 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 OR8U8P0C7N1 319 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 NUTF2P61970 127 aaKnown RBP8.9□□□□□ -0.98
CUX1-205ENST00000425244 NCMAPQ5T1S8 102 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 SLC35E4Q6ICL7 350 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 Q8WTZ3 238 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 LRRC29Q8WV35 223 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 TAF15Q92804 592 aaKnown RBP eCLIP8.9□□□□□ -0.98
CUX1-205ENST00000425244 ZDHHC16Q969W1 377 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 MAP1LC3BQ9GZQ8 125 aa8.9□□□□□ -0.98
CUX1-205ENST00000425244 CHD3Q12873 2000 aaKnown RBP8.9□□□□□ -0.98
CUX1-205ENST00000425244 SPTBN1Q01082 2364 aaKnown RBP8.9□□□□□ -0.99
CUX1-205ENST00000425244 TGIF2-C20orf24A0A0A6YYL0 155 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 TRAV1-1A0A0B4J248 108 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 PPIHO43447 177 aaKnown RBP8.9□□□□□ -0.99
CUX1-205ENST00000425244 IFNA10P01566 189 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 COX5AP20674 150 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 CEACAM8P31997 349 aaPredicted RBP8.9□□□□□ -0.99
CUX1-205ENST00000425244 ZNF83P51522 516 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 KIAA0141Q14154 515 aaPredicted RBP8.9□□□□□ -0.99
CUX1-205ENST00000425244 SMIM21Q3B7S5 101 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 ZNF718Q3SXZ3 478 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 TMEM41BQ5BJD5 291 aa8.9□□□□□ -0.99
CUX1-205ENST00000425244 SAPCD1Q5SSQ6 148 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms