RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 SULT1A2P50226 295 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 SERF2P84101 59 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 TMEM200BQ69YZ2 307 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 RPL7L1Q6DKI1 246 aaKnown RBP6.94□□□□□ -1.3
USP54-203ENST00000418501 OR1L8Q8NGR8 309 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 OR5B3Q8NH48 314 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 SPTA1P02549 2419 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 SZT2Q5T011 3432 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 RPS10-NUDT3A0A1W2PQS6 291 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 J3QR06 171 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 HSPE1P61604 102 aaKnown RBP6.94□□□□□ -1.3
USP54-203ENST00000418501 C17orf58Q2M2W7 97 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 PDLIM3Q53GG5 364 aaPredicted RBP6.94□□□□□ -1.3
USP54-203ENST00000418501 KIR3DL3Q8N743 410 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 TMEM217Q8N7C4 229 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 HSD17B11Q8NBQ5 300 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 RHOVQ96L33 236 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 CCL19Q99731 98 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 SMDT1Q9H4I9 107 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 HSPB7Q9UBY9 170 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 INSIG2Q9Y5U4 225 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 RTTNQ86VV8 2226 aa6.94□□□□□ -1.3
USP54-203ENST00000418501 PTPRQQ9UMZ3 2332 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 CXorf66Q5JRM2 361 aaPredicted RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 RBMS3Q6XE24 437 aaKnown RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 STPG2Q8N412 459 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 NANPQ8TBE9 248 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 HARBI1Q96MB7 349 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 GINS3Q9BRX5 216 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 LPAR2Q9HBW0 351 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 TMEM140Q9NV12 185 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 ZNF257Q9Y2Q1 563 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 CUL9Q8IWT3 2517 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 SMCO3A2RU48 225 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 C17orf98A8MV24 154 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 H0YIZ8 118 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 BRS3P32247 399 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 MAS1LP35410 378 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 ACOT6Q3I5F7 207 aaPredicted RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 SSX9Q7RTT3 188 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 MOB3BQ86TA1 216 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 OR1L6Q8NGR2 347 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 RBMXL1Q96E39 390 aaKnown RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 PSMG3Q9BT73 122 aaPredicted RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 IFI27L2Q9H2X8 130 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 RBKSQ9H477 322 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 C1RLQ9NZP8 487 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 TIMM9Q9Y5J7 89 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 SAA2-SAA4A0A096LPE2 208 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 IGHV2-70P01814 119 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 SAA2P0DJI9 122 aaPredicted RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 DYNLT3P51808 116 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 WDR25Q64LD2 544 aaPredicted RBP6.93□□□□□ -1.3
USP54-203ENST00000418501 C1orf122Q6ZSJ8 110 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 ZNF429Q86V71 674 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 NEUROG1Q92886 237 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 SLC35E1Q96K37 410 aa6.93□□□□□ -1.3
USP54-203ENST00000418501 G3V3Q6 166 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 PLAUP00749 431 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 IGHV1-8P0DP01 117 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 HTR1DP28221 377 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 LOXL3P58215 753 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 AVPI1Q5T686 147 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 OR8G2PQ6IF36 304 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 MMD2Q8IY49 270 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 TEX29Q8N6K0 151 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 BEND2Q8NDZ0 799 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 PARD6GQ9BYG4 376 aaPredicted RBP6.92□□□□□ -1.3
USP54-203ENST00000418501 C19orf12Q9NSK7 152 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 H2AFB1P0C5Y9 115 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 MS4A7Q9GZW8 240 aaPredicted RBP6.92□□□□□ -1.3
USP54-203ENST00000418501 BET1LQ9NYM9 111 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 MPTX1A8MV57 137 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 CST7O76096 145 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 KBTBD11O94819 623 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 CGB3P0DN86 165 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 CGB7P0DN87 165 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 ATF4P18848 351 aaPredicted RBP6.92□□□□□ -1.3
USP54-203ENST00000418501 MST1LQ2TV78 715 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 CT45A1Q5HYN5 189 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 CT45A3Q8NHU0 189 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 OR51B2Q9Y5P1 312 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 KPTNQ9Y664 436 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 NMBP08949 121 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 PJVKQ0ZLH3 352 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 POU2AF1Q16633 256 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 ZNF585BQ52M93 769 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 ETV3LQ6ZN32 361 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 FAM213BQ8TBF2 198 aa6.92□□□□□ -1.3
USP54-203ENST00000418501 ACTR3CQ9C0K3 210 aaPredicted RBP6.92□□□□□ -1.3
USP54-203ENST00000418501 RP1L1Q8IWN7 2480 aaPredicted RBP6.91□□□□□ -1.3
USP54-203ENST00000418501 CORTO00230 105 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 RPL39P5Q59GN2 51 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 MINOS1Q5TGZ0 78 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 Q6ZRG5 221 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 C22orf34Q6ZV56 151 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 ZCCHC24Q8N2G6 241 aaKnown RBP6.91□□□□□ -1.3
USP54-203ENST00000418501 DPM3Q9P2X0 92 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 RNF24Q9Y225 148 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 FOXA2Q9Y261 457 aaPredicted RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms