RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TCTN1Q2MV58 587 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 TBC1D29Q9UFV1 150 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 ACACAQ13085 2346 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 A0A096LPE4 126 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1W2PPZ6 126 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 IZUMO1RA6ND01 250 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 CA6P23280 308 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF658BQ4V348 819 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 OLIG3Q7RTU3 272 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 MRPL43Q8N983 215 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 LRRC29Q8WV35 223 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 ATP23Q9Y6H3 246 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 TRAV8-7A0A075B6U6 113 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1W2PNR3 127 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 OR11H4Q8NGC9 324 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 OR51G1Q8NGK1 321 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 DLX4Q92988 240 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RPS27P42677 84 aaKnown RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 RHOGP84095 191 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 VKORC1L1Q8N0U8 176 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF48Q96MX3 618 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-206ENST00000409809 SH3BGRL3Q9H299 93 aa11.2□□□□□ -0.62
COL6A3-206ENST00000409809 A0A0G2JMM0 328 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 A0A0U1RQS6 177 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1W2PPB8 328 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 KIR3DP1A8MWS1 328 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 ASCL4Q6XD76 172 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 OR4C13Q8NGP0 309 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 OR4A5Q8NH83 315 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 METTL26Q96S19 204 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NRN1Q9NPD7 142 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NPIPB13A6NJU9 1138 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NPIPB4C9JG80 1138 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 H3BUT2 72 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 CXCL12P48061 93 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 SSBP2P81877 361 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-206ENST00000409809 CENPWQ5EE01 88 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF683Q8IZ20 524 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 ATG4DQ86TL0 474 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-206ENST00000409809 C14orf144Q96I85 54 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 CITED1Q99966 193 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 IL36RNQ9UBH0 155 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 ZGLP1P0C6A0 271 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NUBP1P53384 320 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF774Q6NX45 483 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 OR1K1Q8NGR3 316 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 C5orf66Q9H5L9 145 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NXT2Q9NPJ8 142 aaKnown RBP11.19□□□□□ -0.62
COL6A3-206ENST00000409809 K7N7A8 449 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 TSPOP30536 169 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 FAM222BQ8WU58 562 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 NRSN2Q9GZP1 204 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 CCL28Q9NRJ3 127 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 KLKB1P03952 638 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 IL11RAQ14626 422 aa11.19□□□□□ -0.62
COL6A3-206ENST00000409809 TBR1Q16650 682 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 KCNMB2Q9Y691 235 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 GRIFINA4D1Z8 144 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 CDAP32320 146 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 RIPPLY3P57055 190 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 CLDND2Q8NHS1 167 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 TAF1LQ8IZX4 1826 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 ATXN8Q156A1 80 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 RNASEH2CQ8TDP1 164 aaKnown RBP11.18□□□□□ -0.62
COL6A3-206ENST00000409809 PLSCR4Q9NRQ2 329 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 TMEM56-RWDD3S4R434 201 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 LTBP4Q8N2S1 1624 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 ABCA4P78363 2273 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 MKRN2OSH3BPM6 223 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF32P17041 273 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 ARFGEF3Q5TH69 2177 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 M0R1B8 84 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 LGALS1P09382 135 aaKnown RBP11.18□□□□□ -0.62
COL6A3-206ENST00000409809 TNXAQ16473 311 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 DNASE2BQ8WZ79 361 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 C3orf80F5H4A9 247 aa11.18□□□□□ -0.62
COL6A3-206ENST00000409809 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-206ENST00000409809 RCC1LQ96I51 464 aaKnown RBP11.18□□□□□ -0.62
COL6A3-206ENST00000409809 K7EQS6 105 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 IFNL4K9M1U5 179 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 B4GALNT1Q00973 533 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 SMAD4Q13485 552 aaKnown RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 ZNF146Q15072 292 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 HIST3H2BBQ8N257 126 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 PGLYRP4Q96LB8 373 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 GAGE12BA1L429 117 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 SRP19P09132 144 aaKnown RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 ANOS1P23352 680 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 COL10A1Q03692 680 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 SRSF6Q13247 344 aaKnown RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 TRAV1-1A0A0B4J248 108 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 A0A0G2JLM5 398 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 HOXA3O43365 443 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-206ENST00000409809 BIVMQ86UB2 503 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 ABHD14AQ9BUJ0 271 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 A0A1B0GTL3 188 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 KHDC1LQ5JSQ8 128 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 FAM78AQ5JUQ0 283 aa11.17□□□□□ -0.62
COL6A3-206ENST00000409809 GPR146Q96CH1 333 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms