RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NEUROG1Q92886 237 aa10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 DIRC2Q96SL1 478 aa10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 PSMG3Q9BT73 122 aaPredicted RBP10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 UFSP2Q9NUQ7 469 aa10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 OR6C3Q9NZP0 311 aa10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 JPT1Q9UK76 154 aa10.71□□□□□ -0.69
SMARCB1-203ENST00000407082 FAM90A9PA6NNJ1 464 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 ITGB1BP1O14713 200 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 PSPNO60542 156 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 H2AFB1P0C5Y9 115 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 OMGP23515 440 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 RPP30P78346 268 aaKnown RBP10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 AESQ08117 197 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 CR1LQ2VPA4 569 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 KRTAP24-1Q3LI83 254 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 ATRAIDQ6UW56 229 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 ZNF826PQ6ZT77 177 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 FGFRL1Q8N441 504 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 OR1L1Q8NH94 360 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 PINX1Q96BK5 328 aaKnown RBP10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 BSCL2Q96G97 398 aaPredicted RBP10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 CLCC1Q96S66 551 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 SLC35B3Q9H1N7 401 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 OR2D2Q9H210 308 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 MSL2Q9HCI7 577 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 SMCO4Q9NRQ5 59 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 CISD1Q9NZ45 108 aaKnown RBP10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 DUSP13Q9UII6 198 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 GAB2Q9UQC2 676 aa10.7□□□□□ -0.7
SMARCB1-203ENST00000407082 IGLV3-9A0A075B6K5 115 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 E7EQL1 145 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 WNT9BO14905 357 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 AGPAT2O15120 278 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 SOX15O60248 233 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 YPEL1O60688 119 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 CST7O76096 145 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 IGLV2-14P01704 120 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 GATA4P43694 442 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 RAB7AP51149 207 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 PAX9P55771 341 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 FLI1Q01543 452 aaPredicted RBP10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 ZNF585BQ52M93 769 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 VHLLQ6RSH7 139 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 H2BFWTQ7Z2G1 175 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 C5orf24Q7Z6I8 188 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 LILRB2Q8N423 598 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 ZNF561Q8N587 486 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 NUP37Q8NFH4 326 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 TCTEX1D2Q8WW35 142 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 COQ2Q96H96 371 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 MEGF10Q96KG7 1140 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 YPEL2Q96QA6 119 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 C19orf24Q9BVV8 132 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 TMEM231Q9H6L2 316 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 KIAA1456Q9P272 454 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 IL19Q9UHD0 177 aa10.69□□□□□ -0.7
SMARCB1-203ENST00000407082 PLCE1Q9P212 2302 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 TRAV1-1A0A0B4J248 108 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 TRAV39A0A0B4J263 110 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 CD5LO43866 347 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 IGKV1-39P01597 117 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 IGKV1-5P01602 117 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 IGKV1D-39P04432 117 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 IRF2P14316 349 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 ADCYAP1P18509 176 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 GPR12P47775 334 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 UBE2KP61086 200 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 SRSF3P84103 164 aaKnown RBP10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 SRSF2Q01130 221 aaKnown RBP10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 GUCA2BQ16661 112 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 GCSAMQ8N6F7 178 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 OR52L2PQ8NGH6 319 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 MRGPRDQ8TDS7 321 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 FAM234AQ9H0X4 552 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 PLA2G2EQ9NZK7 142 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 RNF7Q9UBF6 113 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 FZR1Q9UM11 496 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 PRELID3BQ9Y3B1 194 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 FAM96BQ9Y3D0 163 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 TIMM9Q9Y5J7 89 aa10.68□□□□□ -0.7
SMARCB1-203ENST00000407082 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.68□□□□□ -0.71e-6■■■□□ 17.8
SMARCB1-203ENST00000407082 ODAMA1E959 279 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 RBFOX3A6NFN3 312 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 MBP02144 154 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 PAX6P26367 422 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 APOBEC3AP31941 199 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 TAGLN2P37802 199 aaKnown RBP10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 GLIPR1P48060 266 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 CEBPDP49716 269 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 PPT1P50897 306 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 TNFRSF9Q07011 255 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 RHEBQ15382 184 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 TMEM217Q8N7C4 229 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 OR2V2Q96R30 315 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 AIFM2Q9BRQ8 373 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 SH3BGRL3Q9H299 93 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 TUBA4BQ9H853 241 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 HSPB7Q9UBY9 170 aa10.67□□□□□ -0.7
SMARCB1-203ENST00000407082 A0A0G2JRQ6 117 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms