RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NMUP48645 174 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 GCSAMLQ5JQS6 135 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 TAAR6Q96RI8 345 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 C5orf63A6NC05 138 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 TSPAN2O60636 221 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 AMY1AP04745 511 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 MYF5P13349 255 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 PRR31Q5SQ13 230 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM164Q5U3C3 297 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 SLC25A47Q6Q0C1 308 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 CXorf67Q86X51 503 aaPredicted RBP7.95□□□□□ -1.14
COL28A1-201ENST00000399429 WFDC8Q8IUA0 241 aa7.95□□□□□ -1.14
COL28A1-201ENST00000399429 A0A1W2PN81 502 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 GPX1P07203 203 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 IGLC2P0DOY2 106 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 IGLC3P0DOY3 106 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 UBE2L3P68036 154 aaKnown RBP7.94□□□□□ -1.14
COL28A1-201ENST00000399429 CENPWQ5EE01 88 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 LYG1Q8N1E2 194 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 ZDHHC16Q969W1 377 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 RNASE7Q9H1E1 156 aaKnown RBP7.94□□□□□ -1.14
COL28A1-201ENST00000399429 LIME1Q9H400 295 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 YTHDF2Q9Y5A9 579 aaKnown RBP7.94□□□□□ -1.14
COL28A1-201ENST00000399429 CEP350Q5VT06 3117 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 FKBP2P26885 142 aaKnown RBP7.94□□□□□ -1.14
COL28A1-201ENST00000399429 CA7P43166 264 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 ANKRD39Q53RE8 183 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 PARM1Q6UWI2 310 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 FAM216AQ8WUB2 273 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 HSPB8Q9UJY1 196 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF831Q5JPB2 1677 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 GTF3C1Q12789 2109 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 A0A0C4DFX4 3053 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 TRBV9A0A0B4J1U6 114 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 OR2T8A6NH00 312 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 CTSSP25774 331 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 GNG3P63215 75 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 FOXL1Q12952 345 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 MUC15Q8N387 334 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 OR2M3Q8NG83 312 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 OR5A2Q8NGI9 324 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 BLNKQ8WV28 456 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 S1PR3Q99500 378 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF703Q9H7S9 590 aaPredicted RBP7.94□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM167BQ9NRX6 74 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 CRIM1Q9NZV1 1036 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 HILPDAQ9Y5L2 63 aa7.94□□□□□ -1.14
COL28A1-201ENST00000399429 PLXNB2O15031 1838 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 GNB1P62873 340 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 TFF2Q03403 129 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 SGK494Q96LW2 274 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 OR2V2Q96R30 315 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 GTSF1LQ9H1H1 148 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 NCOR1P1Q9H4R4 102 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 CLEC5AQ9NY25 188 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 FNDC1Q4ZHG4 1894 aaPredicted RBP7.93□□□□□ -1.14
COL28A1-201ENST00000399429 C7orf71A4D174 169 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 TMEM238C9JI98 176 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 IGHMP01871 453 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 TNFRSF4P43489 277 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 TM4SF20Q53R12 229 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 KRTCAP3Q53RY4 240 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF391Q9UJN7 358 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 POLDIP2Q9Y2S7 368 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 CXCL10P02778 98 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 COA6Q5JTJ3 125 aaKnown RBP7.93□□□□□ -1.14
COL28A1-201ENST00000399429 LHX8Q68G74 356 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 SPACA9Q96E40 222 aaPredicted RBP7.93□□□□□ -1.14
COL28A1-201ENST00000399429 LYZL4Q96KX0 146 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 RTL8AQ9BWD3 113 aa7.93□□□□□ -1.14
COL28A1-201ENST00000399429 DUSP15Q9H1R2 295 aaPredicted RBP7.93□□□□□ -1.14
COL28A1-201ENST00000399429 IGHV1-69-2A0A0G2JMI3 117 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 COX7A2P2O60397 106 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SMPD2O60906 423 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 TIMP3P35625 211 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SSR4P51571 173 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 ARL16Q0P5N6 197 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 OR1C1Q15619 314 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 PPP1R35Q8TAP8 253 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF296Q8WUU4 475 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-201ENST00000399429 TXNDC17Q9BRA2 123 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF355PQ9NSJ1 428 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 F11RQ9Y624 299 aaKnown RBP7.92□□□□□ -1.14
COL28A1-201ENST00000399429 MUC21A0A0G2JKD1 596 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 MUC21A0A140T8X8 626 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SLC25A5P05141 298 aaKnown RBP7.92□□□□□ -1.14
COL28A1-201ENST00000399429 GCSHP23434 173 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 ZNF726P1Q15940 193 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 MUC21Q5SSG8 566 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 FBXW9Q5XUX1 488 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SIGLEC12Q96PQ1 595 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 C12orf49Q9H741 205 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 RALYQ9UKM9 306 aaKnown RBP7.92□□□□□ -1.14
COL28A1-201ENST00000399429 EP400Q96L91 3159 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SPTY2D1-AS1A0A0U1RR47 76 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 IL18BPO95998 194 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 HLA-DRB1P01911 266 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 TEX43Q6ZNM6 134 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 LRRC61Q9BV99 259 aa7.92□□□□□ -1.14
COL28A1-201ENST00000399429 SSBP4Q9BWG4 385 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms