RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 OR6C3Q9NZP0 311 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 USP9XQ93008 2570 aaPredicted RBP9.23□□□□□ -0.93
TCOF1-203ENST00000394269 TNCP24821 2201 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 VSTM5A8MXK1 200 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 PROP1O75360 226 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 H2AFB1P0C5Y9 115 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 NPBWR1P48145 328 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 FGF8P55075 233 aaPredicted RBP9.23□□□□□ -0.93
TCOF1-203ENST00000394269 TNFRSF9Q07011 255 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 UQCC3Q6UW78 93 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 OR10Z1Q8NGY1 313 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 LSM10Q969L4 123 aaKnown RBP9.23□□□□□ -0.93
TCOF1-203ENST00000394269 R3HDM4Q96D70 268 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 S1PR3Q99500 378 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 ATP5SQ99766 215 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 ITPR1Q14643 2758 aa9.23□□□□□ -0.93
TCOF1-203ENST00000394269 SMCO3A2RU48 225 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 REG1BP48304 166 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 ZNF665Q9H7R5 613 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 SVEP1Q4LDE5 3571 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 LHBP01229 141 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 CCL3L1P16619 93 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 UNQ6494/PRO21346Q6UXR6 183 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 ZNF295-AS1Q8N0V1 137 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 C14orf79Q96F83 325 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 EGLN1Q9GZT9 426 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 WSB1Q9Y6I7 421 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 FBP1P09467 338 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 OR4A16Q8NH70 328 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 DTD1Q8TEA8 209 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 OR4C12Q96R67 309 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 QTRT1Q9BXR0 403 aaKnown RBP9.22□□□□□ -0.93
TCOF1-203ENST00000394269 C11orf1Q9H5F2 150 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 VSIRQ9H7M9 311 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 NGBQ9NPG2 151 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 NAV3Q8IVL0 2385 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 DYSFO75923 2080 aa9.22□□□□□ -0.93
TCOF1-203ENST00000394269 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 IFNA10P01566 189 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 SNRNP70P08621 437 aaKnown RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 DAOP14920 347 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 DUTP33316 252 aaKnown RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 DLX1P56177 255 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 RPL31P62899 125 aaKnown RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 HBG1P69891 147 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 HBG2P69892 147 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 CT45A1Q5HYN5 189 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 C1orf229Q6ZS94 237 aaPredicted RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 CT45A3Q8NHU0 189 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 GAFA1Q96PS6 74 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 HSD17B10Q99714 261 aaKnown RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 GFOD1Q9NXC2 390 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 SLC25A10Q9UBX3 287 aaPredicted RBP9.21□□□□□ -0.93
TCOF1-203ENST00000394269 ACANP16112 2415 aa9.21□□□□□ -0.93
TCOF1-203ENST00000394269 TRAV3A0A0B4J244 114 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 A1L4Q6 167 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 DVL1P1P54792 670 aaPredicted RBP9.21□□□□□ -0.94
TCOF1-203ENST00000394269 BAXQ07812 192 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 SLC38A11Q08AI6 406 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 ZNF561Q8N587 486 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 ZBTB34Q8NCN2 500 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 HEYLQ9NQ87 328 aaPredicted RBP9.21□□□□□ -0.94
TCOF1-203ENST00000394269 CISD1Q9NZ45 108 aaKnown RBP9.21□□□□□ -0.94
TCOF1-203ENST00000394269 PRELID3BQ9Y3B1 194 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 PUS1Q9Y606 427 aaKnown RBP eCLIP9.21□□□□□ -0.94
TCOF1-203ENST00000394269 ZFP92A6NM28 416 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 E7EQL1 145 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 DFFBO76075 338 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 LY6HO94772 140 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 OR9G9P0C7N8 305 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 SNCAP37840 140 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 LOXL3P58215 753 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 MRPS11P82912 194 aaKnown RBP9.21□□□□□ -0.94
TCOF1-203ENST00000394269 HTD2P86397 168 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 LYPD2Q6UXB3 125 aa9.21□□□□□ -0.94
TCOF1-203ENST00000394269 KBTBD11-OT1A0A1B0GTJ5 212 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 DEFA4P12838 97 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 CFHR2P36980 270 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 ERVK-16P61578 105 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 C17orf58Q2M2W7 97 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 RXFP4Q8TDU9 374 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 CA5BP1Q8WTZ4 195 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 GNPNAT1Q96EK6 184 aaPredicted RBP9.2□□□□□ -0.94
TCOF1-203ENST00000394269 ARV1Q9H2C2 271 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 RPS10P5Q9NQ39 176 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 JPT1Q9UK76 154 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 STRAPQ9Y3F4 350 aaKnown RBP9.2□□□□□ -0.94
TCOF1-203ENST00000394269 PPIAL4EA0A075B759 164 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 SAA2-SAA4A0A096LPE2 208 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 PPIAL4DF5H284 164 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 H7C2Y5 167 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 SAA2P0DJI9 122 aaPredicted RBP9.2□□□□□ -0.94
TCOF1-203ENST00000394269 PPIAL4FP0DN26 164 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 PEA15Q15121 130 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 CDSNQ15517 529 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 HAPLN4Q86UW8 402 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 VKORC1Q9BQB6 163 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 GNG13Q9P2W3 67 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 NDRG3Q9UGV2 375 aa9.2□□□□□ -0.94
TCOF1-203ENST00000394269 PPIAL4AQ9Y536 164 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms