RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TECTBQ96PL2 329 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 ALKBH7Q9BT30 221 aaPredicted RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 CSTL1Q9H114 145 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 B4GALT7Q9UBV7 327 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 H3BP45 60 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 SLC33A1O00400 549 aaPredicted RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 CRYGSP22914 178 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 CHRNB4P30926 498 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 TMEM267Q0VDI3 215 aaPredicted RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 PIGYQ3MUY2 71 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 FAM27BQ5VT28 67 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 CST9LP1Q5W188 147 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 RPP25LQ8N5L8 163 aaKnown RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 CMTM2Q8TAZ6 248 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 BORCS8Q96FH0 119 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 VAMP8Q9BV40 100 aa9.4□□□□□ -0.9
CUX1-204ENST00000393824 WDR61Q9GZS3 305 aaKnown RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 RYDENQ9NUL5 291 aaKnown RBP9.4□□□□□ -0.9
CUX1-204ENST00000393824 COL6A6A6NMZ7 2263 aa9.4□□□□□ -0.91
CUX1-204ENST00000393824 NCOA6Q14686 2063 aaPredicted RBP9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A10PA6NDY2 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A18PA6NE21 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A16PA6NEW6 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 OR6C6A6NF89 314 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A20PA6NIJ5 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A8PA6NJQ4 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 A6NJY4 79 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A7PA6NKC0 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A22PA8MWA6 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A12PA8MX19 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A5PA8MXJ8 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A23PA8MXZ1 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 H0Y980 276 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 NXPH3O95157 252 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 CNOT4O95628 575 aaKnown RBP9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A15PP0C7V4 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A13PP0C7W8 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A14PP0C7W9 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FAM90A24PP0C7X0 464 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 TPPP2P59282 170 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 YPEL3P61236 119 aaPredicted RBP9.39□□□□□ -0.91
CUX1-204ENST00000393824 ARL16Q0P5N6 197 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 BATFQ16520 125 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 PRR30Q53SZ7 412 aaPredicted RBP9.39□□□□□ -0.91
CUX1-204ENST00000393824 ABHD3Q8WU67 409 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 ORAOV1Q8WV07 137 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 ST3GAL6Q9Y274 331 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FREM1Q5H8C1 2179 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 RTTNQ86VV8 2226 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 CACNA1BQ00975 2339 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1-12A0A0C4DH73 117 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 A0A0U1RQK1 487 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 A0A1B0GUS0 222 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 ZNF320A2RRD8 509 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 MLNRO43193 412 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1D-12P01611 117 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 TFPI2P48307 235 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 FUT6P51993 359 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 HBG1P69891 147 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 HBG2P69892 147 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 TNFRSF14Q92956 283 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 NUDT11Q96G61 164 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 PLEK2Q9NYT0 353 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 PAM16Q9Y3D7 125 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 TIMM9Q9Y5J7 89 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 DOCK7Q96N67 2140 aa9.39□□□□□ -0.91
CUX1-204ENST00000393824 CHD3Q12873 2000 aaKnown RBP9.38□□□□□ -0.91
CUX1-204ENST00000393824 A0A0G2JRQ6 117 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 SLC22A20A6NK97 555 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 TUSC2O75896 110 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 SYNGR4O95473 234 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 CD33P20138 364 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 FAM78BQ5VT40 261 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 HAPLN4Q86UW8 402 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 CALHM1Q8IU99 346 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 LYG1Q8N1E2 194 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 ZIC4Q8N9L1 334 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 OR1L6Q8NGR2 347 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 GPR146Q96CH1 333 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 TRGV5A0A0B4J1U4 118 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 HS3ST1O14792 307 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 NRASP01111 189 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1D-33P01593 117 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1-33P01594 117 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 RAC3P60763 192 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 PPP1CBP62140 327 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 SNAI3Q3KNW1 292 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 KRTAP27-1Q3LI81 207 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 PHYHD1Q5SRE7 291 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 CFAP161Q6P656 301 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 OR4F5Q8NH21 305 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 TAF15Q92804 592 aaKnown RBP eCLIP9.38□□□□□ -0.91
CUX1-204ENST00000393824 OR4F4Q96R69 305 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 VPS25Q9BRG1 176 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 TP53TG3Q9ULZ0 132 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 WIPI2Q9Y4P8 454 aa9.38□□□□□ -0.91
CUX1-204ENST00000393824 TRAV39A0A0B4J263 110 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 IGKV1D-13A0A0B4J2D9 117 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 ZNF716A6NP11 495 aa9.37□□□□□ -0.91
CUX1-204ENST00000393824 TMPRSS2O15393 492 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms