RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 HS3ST3B1Q9Y662 390 aa7.61□□□□□ -1.19
LIG3-202ENST00000378526 TAF1P21675 1872 aa7.61□□□□□ -1.19
LIG3-202ENST00000378526 CD8AP01732 235 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 HOGA1Q86XE5 327 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 DEFB118Q96PH6 123 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 CHAC1Q9BUX1 264 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 RTN4RQ9BZR6 473 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 RNF186Q9NXI6 227 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 SERF1AO75920 110 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 TFPI2P48307 235 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 NOGQ13253 232 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 ZNF79Q15937 498 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 CYP2G1PQ6ZSU1 146 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 COL11A1P12107 1806 aaPredicted RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 ALG1L2C9J202 215 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 HMGA2P52926 109 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 NPC2P61916 151 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 MRPS11P82912 194 aaKnown RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 FXYD3Q14802 87 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 KCNMB1Q16558 191 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 ZNF740Q8NDX6 193 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 CDKN1BP46527 198 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 SLC23A3Q6PIS1 610 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 DEFB108BQ8NET1 73 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 DDB2Q92466 427 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 TNFSF14O43557 240 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 GPR6P46095 362 aaPredicted RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 ORMDL2Q53FV1 153 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 C9orf50Q5SZB4 431 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 UTF1Q5T230 341 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 SVIPQ8NHG7 77 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 TMEM222Q9H0R3 208 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 J3KRW8 73 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 DDNO94850 711 aaPredicted RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 PITX1P78337 314 aaPredicted RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 KRTCAP3Q53RY4 240 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 RNASEH2CQ8TDP1 164 aaKnown RBP7.6□□□□□ -1.19
LIG3-202ENST00000378526 K7N7A8 449 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 RUNX3Q13761 415 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 TMEM144Q7Z5S9 345 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 GPR146Q96CH1 333 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 CXXC4Q9H2H0 198 aa7.6□□□□□ -1.19
LIG3-202ENST00000378526 DEFB108AA8MXU0 73 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 FFAR1O14842 300 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 B4GALT1P15291 398 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 SRSF1Q07955 248 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIG3-202ENST00000378526 C2orf68Q2NKX9 166 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 MVB12AQ96EY5 273 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 FREM1Q5H8C1 2179 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 TRAV41A0A0B4J266 112 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 CD1AP06126 327 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 C5P01031 1676 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 C1orf167Q5SNV9 1468 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 IL2RAP01589 272 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 CD38P28907 300 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 LEPP41159 167 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 FRRS1LQ9P0K9 344 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 SERGEFQ9UGK8 458 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 PCOLCE2Q9UKZ9 415 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 KLF13Q9Y2Y9 288 aaPredicted RBP7.59□□□□□ -1.19
LIG3-202ENST00000378526 TNFRSF18Q9Y5U5 241 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 COL3A1P02461 1466 aaPredicted RBP7.59□□□□□ -1.19
LIG3-202ENST00000378526 A0A1B0GWJ7 208 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 DSCR4P56555 118 aaPredicted RBP7.59□□□□□ -1.19
LIG3-202ENST00000378526 RPL32P62910 135 aaKnown RBP7.59□□□□□ -1.19
LIG3-202ENST00000378526 NKG7Q16617 165 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 KISS1RQ969F8 398 aaPredicted RBP7.59□□□□□ -1.19
LIG3-202ENST00000378526 PEX7O00628 323 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 A0A096LPE4 126 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 A0A1W2PPZ6 126 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 DLL1O00548 723 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 KLF4O43474 513 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 C5orf47Q569G3 176 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 CCDC144NLQ6NUI1 221 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 LOXL4Q96JB6 756 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 RNF39Q9H2S5 420 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 RBPJLQ9UBG7 517 aa7.59□□□□□ -1.19
LIG3-202ENST00000378526 CASP8AP2Q9UKL3 1982 aa7.59□□□□□ -1.2
LIG3-202ENST00000378526 A0A0B4J2E0 115 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 IGKV6D-41A0A0C4DH26 115 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 A0A1B0GX12 115 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 GAGE12HA6NDE8 117 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 IGHV3-9P01782 118 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 LINC00696Q6ZRV3 163 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 TMEM252Q8N6L7 170 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 FER1L6-AS1Q8NA97 138 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 DIRC2Q96SL1 478 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 GLIS2Q9BZE0 524 aaPredicted RBP7.58□□□□□ -1.2
LIG3-202ENST00000378526 PGPA6NDG6 321 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 IFI27P40305 119 aaPredicted RBP7.58□□□□□ -1.2
LIG3-202ENST00000378526 METRNLQ641Q3 311 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 ATP5L2Q7Z4Y8 100 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 TMEM174Q8WUU8 243 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 PRRG2O14669 202 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 KLK8O60259 260 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 GFRA1P56159 465 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 HEPN1Q6WQI6 88 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 FAM19A2Q8N3H0 131 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 ZNF645Q8N7E2 425 aa7.58□□□□□ -1.2
LIG3-202ENST00000378526 SLC45A1Q9Y2W3 748 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms