RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CXCL2P19875 107 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 RANP62826 216 aaKnown RBP12.61□□□□□ -0.39
COL17A1-201ENST00000353479 RBM14Q96PK6 669 aaKnown RBP12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TMEM204Q9BSN7 226 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 PLXNA4Q9HCM2 1894 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 POM121Q96HA1 1249 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 PAXXQ9BUH6 204 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 PTPRDP23468 1912 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 RND2P52198 227 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 NRIP2Q9BQI9 281 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 RTTNQ86VV8 2226 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 IGFBP3P17936 291 aaPredicted RBP12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TIMP3P35625 211 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TFPI2P48307 235 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 PPOXP50336 477 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TCL1AP56279 114 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TPPP2P59282 170 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 TNFRSF9Q07011 255 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 FAM24BQ8N5W8 94 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 QTRT1Q9BXR0 403 aaKnown RBP12.61□□□□□ -0.39
COL17A1-201ENST00000353479 ZNF319Q9P2F9 582 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 SRSF10O75494 262 aaKnown RBP12.61□□□□□ -0.39
COL17A1-201ENST00000353479 HSBP1O75506 76 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 PLAUP00749 431 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 ORM1P02763 201 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 LINC00869P0C866 280 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 UCP3P55916 312 aa12.61□□□□□ -0.39
COL17A1-201ENST00000353479 GAS1P54826 345 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 TMEM187Q14656 261 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 OR10S1Q8NGN2 331 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 ANGPTL6Q8NI99 470 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 TP53RKQ96S44 253 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 UFC1Q9Y3C8 167 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 NOL4LQ96MY1 436 aaPredicted RBP12.6□□□□□ -0.39
COL17A1-201ENST00000353479 LY6G6EA0A0G2JKS1 128 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 HELTA6NFD8 242 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 FCN1O00602 326 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 HSD17B13Q7Z5P4 300 aaPredicted RBP12.6□□□□□ -0.39
COL17A1-201ENST00000353479 U3KQA8 63 aa12.6□□□□□ -0.39
COL17A1-201ENST00000353479 KIAA1324LA8MWY0 1029 aaPredicted RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 OR2T10Q8NGZ9 312 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 TCF19Q9Y242 345 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 KBTBD11O94819 623 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 COL8A1P27658 744 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 ID1P41134 155 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 CBLN4Q9NTU7 201 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 P01737 135 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 PGA5P0DJD9 388 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 FXYD3Q14802 87 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 TOLLIPQ9H0E2 274 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 SLC2A8Q9NY64 477 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 MSRB2Q9Y3D2 182 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 CACNA1GO43497 2377 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 PROB1E7EW31 1015 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 LYNX1G3V0Z9 82 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 TM4SF5O14894 197 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 LYNX1P0DP58 116 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 PMCHP20382 165 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 KIR2DL2P43627 348 aaPredicted RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 LSM10Q969L4 123 aaKnown RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 TMEM18Q96B42 140 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 PLSCR4Q9NRQ2 329 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 ARL2-SNX15V9GYD0 113 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 MDC1Q14676 2089 aaKnown RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 HIST1H1EP10412 219 aaKnown RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 OR10G8Q8NGN5 311 aa12.59□□□□□ -0.39
COL17A1-201ENST00000353479 LYRM2Q9NU23 88 aaPredicted RBP12.59□□□□□ -0.39
COL17A1-201ENST00000353479 IGKV1-9A0A0C4DH69 117 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 KBTBD11-OT1A0A1B0GTJ5 212 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 LOC102723971A0A1B0GUV8 181 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 PDE6DO43924 150 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 TFF1P04155 84 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 HKR1P10072 659 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 SERF2P84101 59 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 C5orf17Q8NAS9 161 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 IL22RA2Q969J5 263 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 FRMPD3Q5JV73 1810 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 FAM90A26D6RGX4 464 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 RAB5AP20339 215 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 KRTDAPP60985 99 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 RNASEKQ6P5S7 137 aaKnown RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 DNM1P46Q6ZS02 220 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 MRPL30Q8TCC3 161 aaKnown RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 ZNF318Q5VUA4 2279 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 MELTFP08582 738 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 SUMO1P63165 101 aaKnown RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 MIC13Q5XKP0 118 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 CLRN3Q8NCR9 226 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 AURKAIP1Q9NWT8 199 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 GOLT1BQ9Y3E0 138 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 TMEM218A2RU14 115 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 PNRC1Q12796 327 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 AWAT1Q58HT5 328 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 METTL26Q96S19 204 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 ZNF430Q9H8G1 570 aaPredicted RBP12.58□□□□□ -0.4
COL17A1-201ENST00000353479 DPM3Q9P2X0 92 aa12.58□□□□□ -0.4
COL17A1-201ENST00000353479 IGSF23A1L1A6 192 aa12.57□□□□□ -0.4
COL17A1-201ENST00000353479 MPDU1O75352 247 aa12.57□□□□□ -0.4
COL17A1-201ENST00000353479 RD3LP0DJH9 198 aa12.57□□□□□ -0.4
COL17A1-201ENST00000353479 FABP4P15090 132 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms