RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SERPINE2P07093 398 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 HOXB4P17483 251 aaPredicted RBP7.48□□□□□ -1.21
USP4-202ENST00000351842 LRRC75A-AS1Q8N1F1 130 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ZDHHC16Q969W1 377 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 MOB3AQ96BX8 217 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 C18orf12Q96KH6 178 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 S1PR3Q99500 378 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 TAS2R3Q9NYW6 316 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 PRELID3BQ9Y3B1 194 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 C17orf98A8MV24 154 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 INAFM1C9JVW0 142 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 TIMM23O14925 209 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 CGB3P0DN86 165 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 CGB7P0DN87 165 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 PRTN3P24158 256 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 DLX6P56179 175 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 GNB1P62873 340 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 PLGLAQ15195 96 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 ZNF660Q6AZW8 331 aaPredicted RBP7.48□□□□□ -1.21
USP4-202ENST00000351842 ABHD5Q8WTS1 349 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 MBD6Q96DN6 1003 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 TP53RKQ96S44 253 aa7.48□□□□□ -1.21
USP4-202ENST00000351842 RAB29O14966 203 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 GPR37O15354 613 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 PROP1O75360 226 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 IFNA7P01567 189 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 OR4E1P0C645 316 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 RRASP10301 218 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 CD99P14209 185 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 PRRX1P54821 245 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 BPIFB3P59826 476 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 RPS16P62249 146 aaKnown RBP7.47□□□□□ -1.21
USP4-202ENST00000351842 LOXL1Q08397 574 aaPredicted RBP7.47□□□□□ -1.21
USP4-202ENST00000351842 TRAT1Q6PIZ9 186 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 CLEC9AQ6UXN8 241 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 SGPP2Q8IWX5 399 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 AGMATQ9BSE5 352 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 RTBDNQ9BSG5 229 aaPredicted RBP7.47□□□□□ -1.21
USP4-202ENST00000351842 ALX4Q9H161 411 aaPredicted RBP7.47□□□□□ -1.21
USP4-202ENST00000351842 A0A096LNT2 108 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 C5orf51A6NDU8 294 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 HMSDA8MTL9 139 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 F2RL2O00254 374 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 GPR31O00270 319 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 LY6G6DO95868 133 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 CNTFRP26992 372 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 DHRS2Q13268 280 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 BVESQ8NE79 360 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 DMBX1Q8NFW5 382 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 OR4P4Q8NGL7 312 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 SIRPDQ9H106 197 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 MGAT4CQ9UBM8 478 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 LPAR3Q9UBY5 353 aa7.47□□□□□ -1.21
USP4-202ENST00000351842 ZNF107Q9UII5 783 aaPredicted RBP7.47□□□□□ -1.21
USP4-202ENST00000351842 MPTX1A8MV57 137 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 PGLYRP1O75594 196 aaPredicted RBP7.46□□□□□ -1.21
USP4-202ENST00000351842 S100GP29377 79 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 G6PCP35575 357 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 RAP2BP61225 183 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 SRSF4Q08170 494 aaKnown RBP7.46□□□□□ -1.21
USP4-202ENST00000351842 EXOSC2Q13868 293 aaKnown RBP7.46□□□□□ -1.21
USP4-202ENST00000351842 HLA-DRB5Q30154 266 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 FBLN7Q53RD9 439 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 FAM120AOSQ5T036 256 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 TMEM268Q5VZI3 342 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 OR8H1Q8NGG4 311 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 RITA1Q96K30 269 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 CABLES2Q9BTV7 478 aa7.46□□□□□ -1.21
USP4-202ENST00000351842 TRBV6-6A0A0A6YYG2 114 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 BUB1B-PAK6H3BSN5 160 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 NPFFO15130 113 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 YPEL1O60688 119 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 OR2F2O95006 317 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 IGKV1D-33P01593 117 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 IGKV1-33P01594 117 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 MYOD1P15172 320 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 TBPP20226 339 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 OR2B8PP59922 312 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 HTD2P86397 168 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 ANKRD39Q53RE8 183 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 KLF17Q5JT82 389 aaPredicted RBP7.46□□□□□ -1.22
USP4-202ENST00000351842 HIST2H2BDQ6DRA6 164 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 DHRS11Q6UWP2 260 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 LY6G5BQ8NDX9 201 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 TNFRSF14Q92956 283 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 TMEM230Q96A57 120 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 WDR89Q96FK6 387 aaPredicted RBP7.46□□□□□ -1.22
USP4-202ENST00000351842 YPEL2Q96QA6 119 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 PDCD10Q9BUL8 212 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 RAB9BQ9NP90 201 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 LINC00527Q9UJ94 153 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 MPPED1O15442 326 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 S1PR2O95136 353 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 HOXA1P49639 335 aaPredicted RBP7.46□□□□□ -1.22
USP4-202ENST00000351842 PAX2Q02962 417 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 ZNF695Q8IW36 515 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 ZNF645Q8N7E2 425 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 ZNF596Q8TC21 504 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 CORO2AQ92828 525 aa7.46□□□□□ -1.22
USP4-202ENST00000351842 SLC25A21Q9BQT8 299 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms