RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CLDND2Q8NHS1 167 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 CA5BP1Q8WTZ4 195 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 PLPPR2Q96GM1 343 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 BBC3Q96PG8 261 aaPredicted RBP10.71□□□□□ -0.69
CLK3-201ENST00000345005 RAB40CQ96S21 281 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 TP53RKQ96S44 253 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 CABLES2Q9BTV7 478 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 CISD1Q9NZ45 108 aaKnown RBP10.71□□□□□ -0.69
CLK3-201ENST00000345005 KCNIP1Q9NZI2 227 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 RNF7Q9UBF6 113 aa10.71□□□□□ -0.69
CLK3-201ENST00000345005 DSCAMO60469 2012 aa10.71□□□□□ -0.7
CLK3-201ENST00000345005 A0A1B0GU03 582 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 IGSF23A1L1A6 192 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 NPIPB11E5RHQ5 1161 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.7□□□□□ -0.7
CLK3-201ENST00000345005 IFNA1P01562 189 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 OPN1MWP04001 364 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 WNT2P09544 360 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 OPN1MW2P0DN77 364 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 OPN1MW3P0DN78 364 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 PSG2P11465 335 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 EGR1P18146 543 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 RND2P52198 227 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 SPRNQ5BIV9 151 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 PCSK4Q6UW60 755 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 GCSAMQ8N6F7 178 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 OR11L1Q8NGX0 322 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 Q8TCH9 128 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 GCM1Q9NP62 436 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 C17orf100A8MU93 164 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 SHISA9B4DS77 424 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 TCAPO15273 167 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 YIF1AO95070 293 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 CD55P08174 381 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 TNFRSF1AP19438 455 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 GNRHRP30968 328 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 OR3A1P47881 315 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 PAX5Q02548 391 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 C5orf24Q7Z6I8 188 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 MRPL52Q86TS9 123 aaKnown RBP10.7□□□□□ -0.7
CLK3-201ENST00000345005 TBC1D26Q86UD7 250 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 CD177Q8N6Q3 437 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 PPP1R35Q8TAP8 253 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 SCGB1C1Q8TD33 95 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 Q8WTZ3 238 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 PSMG3Q9BT73 122 aaPredicted RBP10.7□□□□□ -0.7
CLK3-201ENST00000345005 OR2W1Q9Y3N9 320 aa10.7□□□□□ -0.7
CLK3-201ENST00000345005 ROS1P08922 2347 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 IGKV1D-17A0A075B6S4 117 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 A0A087X0M5 115 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 LOC102723971A0A1B0GUV8 181 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 A0A1B0GX30 115 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 OOEPA6NGQ2 149 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 H0Y980 276 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 SSSCA1O60232 199 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 CYB5R3P00387 301 aaPredicted RBP10.69□□□□□ -0.7
CLK3-201ENST00000345005 IRF2P14316 349 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 DYNLT3P51808 116 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 SERF2P84101 59 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 AESQ08117 197 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 TESK1Q15569 626 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 HAGHQ16775 308 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 NMSQ5H8A3 153 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 LINC01560Q8TB33 94 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 FAM222BQ8WU58 562 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 MBD3L1Q8WWY6 194 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 IL1F10Q8WWZ1 152 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 RCC1LQ96I51 464 aaKnown RBP10.69□□□□□ -0.7
CLK3-201ENST00000345005 FAM210BQ96KR6 192 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 SNX22Q96L94 193 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 PITPNC1Q9UKF7 332 aa10.69□□□□□ -0.7
CLK3-201ENST00000345005 TANC2Q9HCD6 1990 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 RAI1Q7Z5J4 1906 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 TRBV24-1A0A075B6N3 115 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 TRAV39A0A0B4J263 110 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 E7EQL1 145 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 CYB5BO43169 146 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BKO60814 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BJP06899 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BOP23527 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 APOBEC3AP31941 199 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BBP33778 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 GABRA2P47869 451 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BDP58876 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BCP62807 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 CCL20P78556 96 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HOXA4Q00056 320 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST2H2BEQ16778 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 DMRTC2Q8IXT2 367 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 CYB561D1Q8N8Q1 229 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BHQ93079 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 PINX1Q96BK5 328 aaKnown RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 COQ2Q96H96 371 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BNQ99877 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 HIST1H2BMQ99879 126 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 PARD6GQ9BYG4 376 aaPredicted RBP10.68□□□□□ -0.7
CLK3-201ENST00000345005 METRNQ9UJH8 293 aa10.68□□□□□ -0.7
CLK3-201ENST00000345005 PPP1R3CQ9UQK1 317 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms