RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OR1K1Q8NGR3 316 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 MFRPQ9BY79 579 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 ELOVL5Q9NYP7 299 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 MARCH11A6NNE9 402 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 H0Y8X5 98 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 NGFRP08138 427 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 TTC9CQ8N5M4 171 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 GLI3P10071 1580 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 HOXD4P09016 255 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 ZFAND6Q6FIF0 208 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 INO80CQ6PI98 192 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 OR51G1Q8NGK1 321 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 LPAR2Q9HBW0 351 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 RHBDD2Q6NTF9 364 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 GFRALQ6UXV0 394 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 FMC1Q96HJ9 113 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 TCF20Q9UGU0 1960 aaKnown RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 LOC390937A0A1W2PQ73 354 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF83P51522 516 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF658BQ4V348 819 aaPredicted RBP12.41□□□□□ -0.42
COL7A1-201ENST00000328333 PRDM13Q9H4Q3 707 aa12.41□□□□□ -0.42
COL7A1-201ENST00000328333 AHDC1Q5TGY3 1603 aaPredicted RBP12.4□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF418Q8TF45 676 aaPredicted RBP12.4□□□□□ -0.42
COL7A1-201ENST00000328333 SARGQ9BW04 601 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 TNFRSF9Q07011 255 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 OR4C13Q8NGP0 309 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 GCSAMQ8N6F7 178 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 CCL17Q92583 94 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 LRRC61Q9BV99 259 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 AGRNO00468 2067 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 SPEM1Q8N4L4 309 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 NUBP1P53384 320 aa12.4□□□□□ -0.42
COL7A1-201ENST00000328333 ZNF441Q8N8Z8 693 aa12.4□□□□□ -0.43
COL7A1-201ENST00000328333 B4GALNT1Q00973 533 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 DNM1P46Q6ZS02 220 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 C16orf92Q96LL3 132 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 ST20Q9HBF5 79 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 PTPN13Q12923 2485 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 C3orf80F5H4A9 247 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 ANOS1P23352 680 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 CEACAM21Q3KPI0 293 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 CD200R1LQ6Q8B3 271 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 BHLHA15Q7RTS1 189 aaPredicted RBP12.39□□□□□ -0.43
COL7A1-201ENST00000328333 RTN4RL1Q86UN2 441 aaPredicted RBP12.39□□□□□ -0.43
COL7A1-201ENST00000328333 FAM117AQ9C073 453 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 ST6GALNAC2Q9UJ37 374 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 PRRT4C9JH25 899 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 LINC00614P0C842 121 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 GFERP55789 205 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 RNF7Q9UBF6 113 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 F11RQ9Y624 299 aaKnown RBP12.39□□□□□ -0.43
COL7A1-201ENST00000328333 APOMO95445 188 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 APCDD1LQ8NCL9 501 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 FAM216AQ8WUB2 273 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 NUDT11Q96G61 164 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 ASIPP42127 132 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 RND3P61587 244 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 WDR54Q9H977 334 aa12.39□□□□□ -0.43
COL7A1-201ENST00000328333 C8orf88P0DMB2 117 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 VSIG10L2P0DP72 767 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 PIGYQ3MUY2 71 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 PTCRAQ6ISU1 281 aaPredicted RBP12.38□□□□□ -0.43
COL7A1-201ENST00000328333 MGAMO43451 1857 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 NPIPB13A6NJU9 1138 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 NPIPB4C9JG80 1138 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 A0A1B0GUT8 65 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 C7orf71A4D174 169 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 TM4SF4P48230 202 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 FGF12P61328 243 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 DCAF12L2Q5VW00 463 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 TRBV5-5A0A0J9YX44 114 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 RPL31P62899 125 aaKnown RBP12.38□□□□□ -0.43
COL7A1-201ENST00000328333 SMAD4Q13485 552 aaKnown RBP12.38□□□□□ -0.43
COL7A1-201ENST00000328333 ZNF146Q15072 292 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 ERGP11308 486 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 FAM27BQ5VT28 67 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 ANKRD33Q7Z3H0 272 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 GPR82Q96P67 336 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 FTH1P19P0C7X4 201 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 EFNB1P98172 346 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 ACER2Q5QJU3 275 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 CIARTQ8N365 385 aaPredicted RBP12.38□□□□□ -0.43
COL7A1-201ENST00000328333 OVOL2Q9BRP0 275 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 FRMPD3Q5JV73 1810 aa12.38□□□□□ -0.43
COL7A1-201ENST00000328333 SONP18583 2426 aaKnown RBP12.38□□□□□ -0.43
COL7A1-201ENST00000328333 TMEM91Q6ZNR0 172 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 CYP2G1PQ6ZSU1 146 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 NHSL1Q5SYE7 1610 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 RTP5Q14D33 572 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 UCP3P55916 312 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 TMEM252Q8N6L7 170 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 GNRHR2Q96P88 292 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 AURKAIP1Q9NWT8 199 aaPredicted RBP12.37□□□□□ -0.43
COL7A1-201ENST00000328333 IGHV3-43A0A0B4J1X8 118 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 IGHV3-43DP0DP04 118 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 TRAV39A0A0B4J263 110 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 A0A1W2PPC1 479 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 PLNP26678 52 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 PGLYRP4Q96LB8 373 aa12.37□□□□□ -0.43
COL7A1-201ENST00000328333 SLC25A10Q9UBX3 287 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms