RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 MARCH11A6NNE9 402 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 CLDN14O95500 239 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 TNFRSF9Q07011 255 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 SERGEFQ9UGK8 458 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 TAF1LQ8IZX4 1826 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 NANOS3P60323 173 aaKnown RBP14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 CX3CL1P78423 397 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 C16orf47Q6ZP98 133 aaPredicted RBP14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 NUDT10Q8NFP7 164 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 NUDT11Q96G61 164 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 C21orf140B9A014 251 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 VENTXO95231 258 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 GFRA1P56159 465 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 OR11H12B2RN74 326 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 GDF9O60383 454 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 OR11H1Q8NG94 326 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 OR11H2Q8NH07 326 aa14.6□□□□□ -0.07
SMCHD1-201ENST00000320876 GRIFINA4D1Z8 144 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 FXYD3Q14802 87 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 ZGRF1Q86YA3 2104 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 SHANK1Q9Y566 2161 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 CT55Q8WUE5 264 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 MARS2Q96GW9 593 aaKnown RBP14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 AICDAQ9GZX7 198 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 TRBV5-3A0A0A0MS03 114 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 TMEM252Q8N6L7 170 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 TRAV30A0A087WSZ9 112 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM181BA6NEQ2 426 aa14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 ZCCHC14Q8WYQ9 949 aaKnown RBP14.59□□□□□ -0.07
SMCHD1-201ENST00000320876 TNFSF14O43557 240 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 RND3P61587 244 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 MMD2Q8IY49 270 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 GCSAMQ8N6F7 178 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 BRCA1P38398 1863 aaKnown RBP14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A10PA6NDY2 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A18PA6NE21 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A16PA6NEW6 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A20PA6NIJ5 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A8PA6NJQ4 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A7PA6NKC0 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A22PA8MWA6 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A12PA8MX19 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A5PA8MXJ8 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A23PA8MXZ1 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A15PP0C7V4 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A13PP0C7W8 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A14PP0C7W9 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 FAM90A24PP0C7X0 464 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 IGFBP6P24592 240 aaPredicted RBP14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 MIC13Q5XKP0 118 aa14.58□□□□□ -0.07
SMCHD1-201ENST00000320876 CA1P00915 261 aaPredicted RBP14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 HOXD4P09016 255 aaPredicted RBP14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 PSMG4Q5JS54 123 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 C1QL3Q5VWW1 255 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 CLDN16Q9Y5I7 305 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 TSPOP30536 169 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 RNFT1Q5M7Z0 435 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 SAMD13Q5VXD3 122 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 WDR54Q9H977 334 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 TRPM7Q96QT4 1865 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 SSTR5P35346 364 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 OR52M1Q8NGK5 317 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 ARFGEF3Q5TH69 2177 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 OR51G1Q8NGK1 321 aa14.58□□□□□ -0.08
SMCHD1-201ENST00000320876 RPL27AP46776 148 aaKnown RBP14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 TMEM160Q9NX00 188 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 TMEM250H0YL14 139 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 ZNF56Q15929 161 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 FAM27BQ5VT28 67 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 BIVMQ86UB2 503 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 CGB1A6NKQ9 187 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 C10orf111Q8N326 155 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 DDB2Q92466 427 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 AGFG2O95081 481 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 OR5A1Q8NGJ0 315 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 PSMG3Q9BT73 122 aaPredicted RBP14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 MDP1Q86V88 176 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 SRSF12Q8WXF0 261 aaKnown RBP14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 KLK15Q9H2R5 256 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 COL18A1P39060 1754 aa14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 TBL2Q9Y4P3 447 aaKnown RBP14.57□□□□□ -0.08
SMCHD1-201ENST00000320876 LCN2P80188 198 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 C5orf66Q9H5L9 145 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 GSN-AS1Q9NRJ2 163 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 CNOT1A5YKK6 2376 aaKnown RBP14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 TRBV23-1A0A0A0MS06 115 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 A0A1B0GWB2 263 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 C8orf88P0DMB2 117 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 H2BFSP57053 126 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 CENPWQ5EE01 88 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 TIMP4Q99727 224 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 UCN2Q96RP3 112 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 NTN1O95631 604 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 SUMO2P61956 95 aaKnown RBP14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 KLHDC2Q9Y2U9 406 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 COL5A3P25940 1745 aaPredicted RBP14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 HLA-DQB1P01920 261 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 GPX1P07203 203 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 CBLN1P23435 193 aa14.56□□□□□ -0.08
SMCHD1-201ENST00000320876 PCNX2A6NKB5 2137 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms