RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 SRSF4Q08170 494 aaKnown RBP14.64□□□□□ -0.07
HMGA1-201ENST00000311487 TMEM128Q5BJH2 165 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 OR2B11Q5JQS5 317 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 LPCAT3Q6P1A2 487 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 C8orf31Q8N9H6 132 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 CASTOR1Q8WTX7 329 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 ZDHHC16Q969W1 377 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 MALSU1Q96EH3 234 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 SCGB3A2Q96PL1 93 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 PHB2Q99623 299 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 RTBDNQ9BSG5 229 aaPredicted RBP14.64□□□□□ -0.07
HMGA1-201ENST00000311487 AMMECR1Q9Y4X0 333 aaPredicted RBP14.64□□□□□ -0.07
HMGA1-201ENST00000311487 NF1P21359 2839 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 CCSO14618 274 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 TIMM23O14925 209 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 HNF4GQ14541 408 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 TGIF2LXQ8IUE1 241 aa14.64□□□□□ -0.07
HMGA1-201ENST00000311487 TBL2Q9Y4P3 447 aaKnown RBP14.64□□□□□ -0.07
HMGA1-201ENST00000311487 IGHV1-3A0A0C4DH29 117 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 CRLF1O75462 422 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 CT45A6P0DMU7 189 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 CT45A5P0DMU8 189 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 CT45A7P0DMV0 189 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 CEACAM3P40198 252 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 SURF2Q15527 256 aaPredicted RBP14.63□□□□□ -0.07
HMGA1-201ENST00000311487 LY6EQ16553 131 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 MINOS1Q5TGZ0 78 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF645Q8N7E2 425 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 OR8H1Q8NGG4 311 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 SSX3Q99909 188 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 MINOS1-NBL1R4GNA1 71 aa14.63□□□□□ -0.07
HMGA1-201ENST00000311487 A0A1W2PPI3 338 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 LINC00473A8K010 186 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 HMSDA8MTL9 139 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 MPC2O95563 127 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 IGHV4-59P01825 116 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 FBP1P09467 338 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 IL3RAP26951 378 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF833PQ6ZTB9 187 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 S1PR3Q99500 378 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 TRAV14DV4A0A0A6YYC5 116 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 DBX1A6NMT0 343 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 HOXA3O43365 443 aaPredicted RBP14.62□□□□□ -0.07
HMGA1-201ENST00000311487 SFT2D2O95562 160 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 GAPDHP04406 335 aaKnown RBP14.62□□□□□ -0.07
HMGA1-201ENST00000311487 RPL30P62888 115 aaKnown RBP14.62□□□□□ -0.07
HMGA1-201ENST00000311487 TEX261Q6UWH6 196 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 TAF15Q92804 592 aaKnown RBP eCLIP14.62□□□□□ -0.07
HMGA1-201ENST00000311487 RITA1Q96K30 269 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 U3KQ87 197 aa14.62□□□□□ -0.07
HMGA1-201ENST00000311487 FXYD6-FXYD2A0A087WZ82 144 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 H3BUX3 64 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 L7N2F9 121 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 ITGB1BP1O14713 200 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 HTR2BP41595 481 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 SUPT4H1P63272 117 aaKnown RBP14.61□□□□□ -0.07
HMGA1-201ENST00000311487 KCTD9Q7L273 389 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 TMEM219Q86XT9 240 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF383Q8NA42 475 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 OR51H1Q8NH63 302 aa14.61□□□□□ -0.07
HMGA1-201ENST00000311487 SNAPC5O75971 98 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 ECI1P42126 302 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 HES1Q14469 280 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 OPCMLQ14982 345 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 ARPC5O15511 151 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF137PP52743 207 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 SLC9A3R2Q15599 337 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 C9orf139Q6ZV77 190 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 TEX29Q8N6K0 151 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF680Q8NEM1 530 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 PIFOQ8TCI5 191 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 NABP2Q9BQ15 211 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 PDCD10Q9BUL8 212 aa14.6□□□□□ -0.07
HMGA1-201ENST00000311487 A0A0B4J2A0 478 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 H7C2Y5 167 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 IGKV1D-33P01593 117 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 IGKV1-33P01594 117 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 SNRNP70P08621 437 aaKnown RBP14.59□□□□□ -0.07
HMGA1-201ENST00000311487 DUTP33316 252 aaKnown RBP14.59□□□□□ -0.07
HMGA1-201ENST00000311487 BPIFB3P59826 476 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 SEC22AQ96IW7 307 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 RSRP1Q9BUV0 290 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 ESM1Q9NQ30 184 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 SHPKQ9UHJ6 478 aa14.59□□□□□ -0.07
HMGA1-201ENST00000311487 C14orf166Q9Y224 244 aaKnown RBP14.59□□□□□ -0.07
HMGA1-201ENST00000311487 IGKV1-16P04430 117 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 FAM157CP0CG43 387 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 C4BPBP20851 252 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 PIGPP57054 158 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 ZNF816Q0VGE8 651 aaPredicted RBP14.58□□□□□ -0.07
HMGA1-201ENST00000311487 ABCA11PQ4W5N1 156 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 Q6YL49 198 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 TCTEX1D2Q8WW35 142 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 CFHR4Q92496 578 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 MEGF9Q9H1U4 602 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 PRR13Q9NZ81 148 aa14.58□□□□□ -0.07
HMGA1-201ENST00000311487 FAM25EA8MYX2 175 aa14.58□□□□□ -0.08
HMGA1-201ENST00000311487 PGLYRP1O75594 196 aaPredicted RBP14.58□□□□□ -0.08
HMGA1-201ENST00000311487 CTSDP07339 412 aaPredicted RBP14.58□□□□□ -0.08
HMGA1-201ENST00000311487 IER3P46695 156 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms