RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 DLL1O00548 723 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 HOXD4P09016 255 aaPredicted RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 LYRM7Q5U5X0 104 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 C1orf174Q8IYL3 243 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 PUSL1Q8N0Z8 303 aaKnown RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 LNP1A1A4G5 178 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 SS18L1O75177 396 aaPredicted RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 RECKO95980 971 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 FAM201AQ5SY85 155 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 NEU1Q99519 415 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 ZNFX1Q9P2E3 1918 aaKnown RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 ARHGEF17Q96PE2 2063 aaPredicted RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.81□□□□□ -0.84
USP53-201ENST00000274030 A0A1W2PR77 199 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 IGKV3-20P01619 116 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 CKS2P33552 79 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 RAB24Q969Q5 203 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 S4R3C0 116 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 KIAA1644Q3SXP7 199 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 PNKDQ8N490 385 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 Q96M66 194 aa9.81□□□□□ -0.84
USP53-201ENST00000274030 UQCRFS1P47985 274 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 COMPP49747 757 aaPredicted RBP9.8□□□□□ -0.84
USP53-201ENST00000274030 PPP1R32Q7Z5V6 425 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ZNF430Q9H8G1 570 aaPredicted RBP9.8□□□□□ -0.84
USP53-201ENST00000274030 TMEM56-RWDD3S4R434 201 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 UBR3Q6ZT12 1888 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ARL14EPLP0DKL9 152 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 EGR1P18146 543 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 TNFRSF9Q07011 255 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 RIPPLY2Q5TAB7 128 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 CD200R1LQ6Q8B3 271 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 OR11H4Q8NGC9 324 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 PKIBQ9C010 78 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ARFGEF1Q9Y6D6 1849 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 HSPE1P61604 102 aaKnown RBP9.8□□□□□ -0.84
USP53-201ENST00000274030 FAM27E3Q08E93 113 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ABLIM2Q6H8Q1 611 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 C1QL2Q7Z5L3 287 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ANKRD31Q8N7Z5 1873 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ZNF207O43670 478 aaKnown RBP9.8□□□□□ -0.84
USP53-201ENST00000274030 CRYBB3P26998 211 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 C2orf83Q53S99 150 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 WFIKKN1Q96NZ8 548 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 KLK15Q9H2R5 256 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 ZNF273Q14593 569 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 RRN3P1Q2M238 152 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 SMUG1Q53HV7 270 aa9.8□□□□□ -0.84
USP53-201ENST00000274030 IGHV3-49A0A0A0MS15 119 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 THY1P04216 161 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 SELENOTP62341 195 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 RPL39P5Q59GN2 51 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 TGIF2-C20orf24A0A0A6YYL0 155 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 IGKV1D-43A0A0B4J1Z2 117 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 KBTBD11O94819 623 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 CD99P14209 185 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 TMEM177Q53S58 311 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 LAIR2Q6ISS4 152 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 MIEN1Q9BRT3 115 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 IGHV1-69-2A0A0G2JMI3 117 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 MPDU1O75352 247 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 IGHV3-23P01764 117 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 ACSF3Q4G176 576 aaPredicted RBP9.79□□□□□ -0.84
USP53-201ENST00000274030 NPIPB3Q92617 1050 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 DNAJC4Q9NNZ3 241 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 TCF19Q9Y242 345 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 LAMB2P55268 1798 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 LOC105371242A0A075B767 164 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 A1L4Q6 167 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 CD74P04233 296 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 DRAM1Q8N682 238 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 APCDD1LQ8NCL9 501 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 DDB2Q92466 427 aa9.79□□□□□ -0.84
USP53-201ENST00000274030 MOSP00540 346 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 SMIM6P0DI80 62 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 MFAP4P55083 255 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 SRSF12Q8WXF0 261 aaKnown RBP9.78□□□□□ -0.84
USP53-201ENST00000274030 QTRT1Q9BXR0 403 aaKnown RBP9.78□□□□□ -0.84
USP53-201ENST00000274030 MYO16Q9Y6X6 1858 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 IGKV3OR2-268A0A0C4DH90 116 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 SYNGR3O43761 229 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FBLIM1Q8WUP2 373 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 A6NDN8 102 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 RND3P61587 244 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 TP53RKQ96S44 253 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 AMMECR1LQ6DCA0 310 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 GDF15Q99988 308 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 NPDC1Q9NQX5 325 aaPredicted RBP9.78□□□□□ -0.84
USP53-201ENST00000274030 ZFP30Q9Y2G7 519 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 A0A0G2JMM0 328 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 A0A1W2PPB8 328 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 A0A1W2PRS3 328 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A10PA6NDY2 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A18PA6NE21 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A16PA6NEW6 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A20PA6NIJ5 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A8PA6NJQ4 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A7PA6NKC0 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 FAM90A22PA8MWA6 464 aa9.78□□□□□ -0.84
USP53-201ENST00000274030 KIR3DP1A8MWS1 328 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms