RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 DHRS13Q6UX07 377 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 LSM10Q969L4 123 aaKnown RBP10.65□□□□□ -0.7
LIG1-201ENST00000263274 RAB24Q969Q5 203 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 KIAA1549Q9HCM3 1950 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 LAMA5O15230 3695 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 C9orf172C9J069 976 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 KLRC4-KLRK1H3BQV0 150 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 SSTR5P35346 364 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 GCSAMLQ5JQS6 135 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 Q6P435 159 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 WDR86Q86TI4 376 aa10.65□□□□□ -0.7
LIG1-201ENST00000263274 ACTR3CQ9C0K3 210 aaPredicted RBP10.65□□□□□ -0.7
LIG1-201ENST00000263274 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.65□□□□□ -0.7
LIG1-201ENST00000263274 TRAV38-1A0A0B4J264 116 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 B4E171 279 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 TIMM8AO60220 97 aaPredicted RBP10.65□□□□□ -0.71
LIG1-201ENST00000263274 HBZP02008 142 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 COX5AP20674 150 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 TGFBR3Q03167 851 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 RNPS1Q15287 305 aaKnown RBP10.65□□□□□ -0.71
LIG1-201ENST00000263274 ZNF705AQ6ZN79 300 aaPredicted RBP10.65□□□□□ -0.71
LIG1-201ENST00000263274 OR51G1Q8NGK1 321 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 GNG12Q9UBI6 72 aa10.65□□□□□ -0.71
LIG1-201ENST00000263274 PIGBOS1A0A0B4J2F0 54 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 C1QTNF9BB2RNN3 333 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 C12orf77C9JDV5 145 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 GALR2O43603 387 aaPredicted RBP10.64□□□□□ -0.71
LIG1-201ENST00000263274 NPSP0C0P6 89 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 RAB4AP20338 218 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 CD81P60033 236 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 DUSP13Q9UII6 198 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 TRGV5A0A0B4J1U4 118 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 TMEM30CPA0ZSE6 113 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 PGPEP1LA6NFU8 196 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 M0R143 59 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 CD46P15529 392 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 P2RY6Q15077 328 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 DMRTA1Q5VZB9 504 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 VKORC1L1Q8N0U8 176 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 SNHG12Q9BXW3 62 aa10.64□□□□□ -0.71
LIG1-201ENST00000263274 HEYLQ9NQ87 328 aaPredicted RBP10.64□□□□□ -0.71
LIG1-201ENST00000263274 FCGR3BO75015 233 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 IGLV2-14P01704 120 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 SP1P08047 785 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 SLC25A6P12236 298 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 RPL23P62829 140 aaKnown RBP10.63□□□□□ -0.71
LIG1-201ENST00000263274 PMS2P11Q13670 270 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 FAM78BQ5VT40 261 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 ZNF497Q6ZNH5 498 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 MBD3L1Q8WWY6 194 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 PSMG3Q9BT73 122 aaPredicted RBP10.63□□□□□ -0.71
LIG1-201ENST00000263274 ZNF320A2RRD8 509 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 GYPAP02724 150 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 GZMBP10144 247 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 PSG7Q13046 419 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 NRN1LQ496H8 165 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 C1orf185Q5T7R7 199 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 MOB1BQ7L9L4 216 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 LINC00596Q86U02 117 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 C1orf210Q8IVY1 113 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 NOL4LQ96MY1 436 aaPredicted RBP10.63□□□□□ -0.71
LIG1-201ENST00000263274 TRIB1Q96RU8 372 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 TMEM147Q9BVK8 224 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 COL25A1Q9BXS0 654 aaPredicted RBP10.63□□□□□ -0.71
LIG1-201ENST00000263274 PKIBQ9C010 78 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 PITPNC1Q9UKF7 332 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 C11orf94C9JXX5 98 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 SCGB1D1O95968 90 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 MAS1LP35410 378 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 MPV17P39210 176 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 SRSF7Q16629 238 aaKnown RBP eCLIP10.63□□□□□ -0.71
LIG1-201ENST00000263274 VHLLQ6RSH7 139 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 DCHS1Q96JQ0 3298 aa10.63□□□□□ -0.71
LIG1-201ENST00000263274 TRAV1-1A0A0B4J248 108 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 CTXND1A0A1B0GTU2 59 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 TNFSF15O95150 251 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 MPLP40238 635 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 PDLIM3Q53GG5 364 aaPredicted RBP10.62□□□□□ -0.71
LIG1-201ENST00000263274 PRAMEF5Q5TYX0 476 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 KLF13Q9Y2Y9 288 aaPredicted RBP10.62□□□□□ -0.71
LIG1-201ENST00000263274 C19orf67A6NJJ6 358 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 LRRC30A6NM36 301 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 KBTBD11O94819 623 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 BCL2L2Q92843 193 aaPredicted RBP10.62□□□□□ -0.71
LIG1-201ENST00000263274 TMEM208Q9BTX3 173 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 METRNQ9UJH8 293 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 SPTA1P02549 2419 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 TGOLN2O43493 480 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 GZMHP20718 246 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 CDC34P49427 236 aaPredicted RBP10.62□□□□□ -0.71
LIG1-201ENST00000263274 PRSS8Q16651 343 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 OR2T10Q8NGZ9 312 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 P2RX4Q99571 388 aa10.62□□□□□ -0.71
LIG1-201ENST00000263274 MRPS18CQ9Y3D5 142 aaKnown RBP10.62□□□□□ -0.71
LIG1-201ENST00000263274 PCNX1Q96RV3 2341 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.61□□□□□ -0.71
LIG1-201ENST00000263274 NDUFB4O95168 129 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 CCL11P51671 97 aa10.61□□□□□ -0.71
LIG1-201ENST00000263274 JOSD1Q15040 202 aaPredicted RBP10.61□□□□□ -0.71
LIG1-201ENST00000263274 Q8IYB0 196 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms