RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 IFT22Q9H7X7 185 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 C7orf77A4D0Y5 90 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 IGHV3-23P01764 117 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 IGKV3-11P04433 115 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 ACAA1P09110 424 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-201ENST00000254630 ARL14EPLP0DKL9 152 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 GCSHP23434 173 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 NPBWR2P48146 333 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 COMPP49747 757 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-201ENST00000254630 RPS20P60866 119 aaKnown RBP7.44□□□□□ -1.22
PTCD3-201ENST00000254630 SELENOTP62341 195 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 TNFRSF9Q07011 255 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 TIMM23BQ5SRD1 257 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 FBLIM1Q8WUP2 373 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 SNRPCP09234 159 aaKnown RBP7.44□□□□□ -1.22
PTCD3-201ENST00000254630 UBE2V2Q15819 145 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 ASPHD2Q6ICH7 369 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 PET117Q6UWS5 81 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 TMEM105Q8N8V8 129 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 NEU4Q8WWR8 484 aaPredicted RBP7.44□□□□□ -1.22
PTCD3-201ENST00000254630 DDB2Q92466 427 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 LTBP1Q14766 1721 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 CIDEAO60543 219 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 ZG16O60844 167 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 SULT1A2P50226 295 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 CD300CQ08708 224 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 RTN4RL2Q86UN3 420 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 GPR132Q9UNW8 380 aa7.44□□□□□ -1.22
PTCD3-201ENST00000254630 LCTP09848 1927 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 LOC390937A0A1W2PQ73 354 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 FAM90A26D6RGX4 464 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 IGLV3-19P01714 112 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 BPIFA4PQ86YQ2 179 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 RAB24Q969Q5 203 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 A1L4Q6 167 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 LINC00862A6NCI5 91 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 PGPA6NDG6 321 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 P2RY4P51582 365 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 OR51M1Q9H341 326 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 TMEM106BQ9NUM4 274 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 CDC42EP3Q9UKI2 254 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 SCN3AQ9NY46 2000 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 PTPRFP10586 1907 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 A6NDN8 102 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 KBTBD11O94819 623 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 NUDT3O95989 172 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 EGR4Q05215 589 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 TMEM187Q14656 261 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 CBY1Q9Y3M2 126 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 MARCH11A6NNE9 402 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 J3QW42 95 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 NDUFB4O95168 129 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 CFDP00746 253 aaPredicted RBP7.43□□□□□ -1.22
PTCD3-201ENST00000254630 HLA-DQB1P01920 261 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 CD99P14209 185 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 SSTR5P35346 364 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 C1orf162Q8NEQ5 155 aaPredicted RBP7.43□□□□□ -1.22
PTCD3-201ENST00000254630 TAF15Q92804 592 aaKnown RBP eCLIP7.43□□□□□ -1.22
PTCD3-201ENST00000254630 TBX15Q96SF7 602 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 SLC25A33Q9BSK2 321 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 MRPL32Q9BYC8 188 aaKnown RBP7.43□□□□□ -1.22
PTCD3-201ENST00000254630 GP6Q9HCN6 339 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 NPIPB6E9PJ23 425 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 RELBQ01201 579 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 CYB561D1Q8N8Q1 229 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 OR4B1Q8NGF8 309 aa7.43□□□□□ -1.22
PTCD3-201ENST00000254630 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 IFITM10A6NMD0 228 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 NPFFO15130 113 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 ZNF324O75467 553 aaPredicted RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 ZNF708P17019 499 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 TSPOP30536 169 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 MEOX2P50222 304 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 TCTAP57738 103 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 HSPE1P61604 102 aaKnown RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 PHLDA3Q9Y5J5 127 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 TRAV20A0A0B4J274 112 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 CD81P60033 236 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 SNRPD3P62318 126 aaKnown RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 FAM27E3Q08E93 113 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 RAB37Q96AX2 223 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 SLC25A38Q96DW6 304 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 DNAJC4Q9NNZ3 241 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 ELF5Q9UKW6 265 aaPredicted RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 A8MWL6 223 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 IGHV1-2P23083 117 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 UNQ9370/PRO34162Q6UXP9 181 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 PQLC2Q6ZP29 291 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 TMEM252Q8N6L7 170 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 ZNF383Q8NA42 475 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 RTN4RQ9BZR6 473 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 C17orf51A8MQB3 221 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 GPX1P07203 203 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 DLX6P56179 175 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 FAM3BP58499 235 aaPredicted RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 RPL39P5Q59GN2 51 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 FAM168AQ92567 244 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 GPHA2Q96T91 129 aa7.42□□□□□ -1.22
PTCD3-201ENST00000254630 TRAF4Q9BUZ4 470 aaPredicted RBP7.42□□□□□ -1.22
PTCD3-201ENST00000254630 RAXQ9Y2V3 346 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms