RNA–Protein interactions for RNA: ENST00000249499.7

HOXD9-201, Transcript of homeobox D9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD9, Length 1,870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9-201ENST00000249499 CT45A3Q8NHU0 189 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 TMEM106BQ9NUM4 274 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 DCAF16Q9NXF7 216 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 AGPAT2O15120 278 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 TMPRSS2O15393 492 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 FCGR3BO75015 233 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 SNAPINO95295 136 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 THBS3P49746 956 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 ZNF273Q14593 569 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 LRRC75BQ2VPJ9 315 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 HAPLN4Q86UW8 402 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 TGIF2LYQ8IUE0 185 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 LILRB2Q8N423 598 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 DTD1Q8TEA8 209 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 SCRT1Q9BWW7 348 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 GAL3ST2Q9H3Q3 398 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 DYNLRB1Q9NP97 96 aa18.88■□□□□ 0.61
HOXD9-201ENST00000249499 SLC25A10Q9UBX3 287 aaPredicted RBP18.88■□□□□ 0.61
HOXD9-201ENST00000249499 RPUSD1Q9UJJ7 312 aaKnown RBP18.88■□□□□ 0.61
HOXD9-201ENST00000249499 TANC2Q9HCD6 1990 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 USF3Q68DE3 2245 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 ZG16O60844 167 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 SFTA3P0C7M3 94 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 NQO2P16083 231 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 ERVK-16P61578 105 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 ARL16Q0P5N6 197 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 GUK1Q16774 197 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 OR52E5Q8NH55 327 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 OR4S2Q8NH73 311 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 DSCAML1Q8TD84 2053 aa18.87■□□□□ 0.61
HOXD9-201ENST00000249499 CCL21O00585 134 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 TNFRSF13BO14836 293 aaPredicted RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 ATXN7O15265 892 aaPredicted RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 SLC31A2O15432 143 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 SERF2P84101 59 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 TLE4Q04727 773 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 PDLIM3Q53GG5 364 aaPredicted RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 RPL39P5Q59GN2 51 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 PUSL1Q8N0Z8 303 aaKnown RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 FAM208BQ5VWN6 2430 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 RUNX1Q01196 453 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 THNSL2Q86YJ6 484 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 PINX1Q96BK5 328 aaKnown RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 RALYQ9UKM9 306 aaKnown RBP18.86■□□□□ 0.61
HOXD9-201ENST00000249499 KPTNQ9Y664 436 aa18.86■□□□□ 0.61
HOXD9-201ENST00000249499 RAI1Q7Z5J4 1906 aaPredicted RBP18.85■□□□□ 0.61
HOXD9-201ENST00000249499 PCNX1Q96RV3 2341 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 HBE1P02100 147 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 H2AFB1P0C5Y9 115 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 NDUFB7P17568 137 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 LINC00205P59089 165 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 SLC38A11Q08AI6 406 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 GUCA2BQ16661 112 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 SP5Q6BEB4 398 aaPredicted RBP18.85■□□□□ 0.61
HOXD9-201ENST00000249499 SLC25A48Q6ZT89 311 aaKnown RBP18.85■□□□□ 0.61
HOXD9-201ENST00000249499 ZNF251Q9BRH9 671 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 KAAG1Q9UBP8 84 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 TIMM9Q9Y5J7 89 aa18.85■□□□□ 0.61
HOXD9-201ENST00000249499 SAA2-SAA4A0A096LPE2 208 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 TSPAN4O14817 238 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 NDUFA2O43678 99 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 RBMXL2O75526 392 aaKnown RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 SAA2P0DJI9 122 aaPredicted RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 RAB2AP61019 212 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 MRPS11P82912 194 aaKnown RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 ZCCHC24Q8N2G6 241 aaKnown RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 WDR61Q9GZS3 305 aaKnown RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 TRAV1-1A0A0B4J248 108 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 DNASE2O00115 360 aaPredicted RBP18.84■□□□□ 0.61
HOXD9-201ENST00000249499 SFTPCP11686 197 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 DAOP14920 347 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 OR4C12Q96R67 309 aa18.84■□□□□ 0.61
HOXD9-201ENST00000249499 SPCS3P61009 180 aa18.83■□□□□ 0.6
HOXD9-201ENST00000249499 RPL31P62899 125 aaKnown RBP18.83■□□□□ 0.6
HOXD9-201ENST00000249499 PRAMEF5Q5TYX0 476 aa18.83■□□□□ 0.6
HOXD9-201ENST00000249499 CCL17Q92583 94 aa18.83■□□□□ 0.6
HOXD9-201ENST00000249499 KIAA1456Q9P272 454 aa18.83■□□□□ 0.6
HOXD9-201ENST00000249499 PMS2P5A8MQ11 134 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 CEBPZOSA8MTT3 80 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 OR9G9P0C7N8 305 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 NFYBP25208 207 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 RPP30P78346 268 aaKnown RBP18.82■□□□□ 0.6
HOXD9-201ENST00000249499 LRRC10Q5BKY1 277 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 SPSB3Q6PJ21 355 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 HEPN1Q6WQI6 88 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 CENPVQ7Z7K6 275 aaPredicted RBP18.82■□□□□ 0.6
HOXD9-201ENST00000249499 ZNF429Q86V71 674 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 OR4A16Q8NH70 328 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 RBMXL1Q96E39 390 aaKnown RBP18.82■□□□□ 0.6
HOXD9-201ENST00000249499 TMEM147Q9BVK8 224 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 EIF5A2Q9GZV4 153 aaKnown RBP18.82■□□□□ 0.6
HOXD9-201ENST00000249499 FAM90A27PA6NNH2 459 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 C9JQL5 133 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 NDUFB3O43676 98 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 FSTL3O95633 263 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 GNB2P62879 340 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 POU2AF1Q16633 256 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 LYG1Q8N1E2 194 aa18.82■□□□□ 0.6
HOXD9-201ENST00000249499 OR10P1Q8NGE3 313 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms