RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SEC11BP0C7V7 166 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 FGF12P61328 243 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 LRRTM1Q86UE6 522 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 C10orf126Q8N4M7 172 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF525Q8N782 197 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 Q8NFD4 153 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 C2CD4CQ8TF44 421 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 AQP10Q96PS8 301 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF2Q9BSG1 426 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PRORYQ9H606 182 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 IDI2-AS1Q9NZ38 188 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TLN2Q9Y4G6 2542 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 IGLV3-12A0A075B6K2 115 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 IGSF23A1L1A6 192 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PGPA6NDG6 321 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 MFSD2BA6NFX1 497 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM262E9PQX1 116 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 APELAP0DMC3 54 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ISL1P61371 349 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 KIAA1644Q3SXP7 199 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 IGF2-ASQ6U949 168 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 C20orf196Q8IYI0 205 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 CLRN3Q8NCR9 226 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 FAM131CQ96AQ9 280 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PLA2G12AQ9BZM1 189 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 RANGRFQ9HD47 186 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM140Q9NV12 185 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TRAV30A0A087WSZ9 112 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 IGHV2OR16-5A0A0B4J2B6 119 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 A0A1B0GU03 582 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 B4DEV8 164 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ATP5IP56385 69 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 SNRPNP63162 240 aaKnown RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PDZK1IP1Q13113 114 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TEX38Q6PEX7 206 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 SFT2D1Q8WV19 159 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 RGP1Q92546 391 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TSPAN32Q96QS1 320 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 SH2D2AQ9NP31 389 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZSWIM8A7E2V4 1837 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ARID2Q68CP9 1835 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 NPIPB11E5RHQ5 1161 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNHIT1O43257 154 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 NXPH3O95157 252 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PGA3P0DJD8 388 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PLA2G2AP14555 144 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ASIPP42127 132 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZP1P60852 638 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 PSG4Q00888 419 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TOMM20LQ6UXN7 152 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM179BQ7Z7N9 219 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM116Q8NCL8 245 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZBTB34Q8NCN2 500 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 BVESQ8NE79 360 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 C12orf57Q99622 126 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 RNF122Q9H9V4 155 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 TMEM167BQ9NRX6 74 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZFP30Q9Y2G7 519 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 DOCK4Q8N1I0 1966 aa4.31□□□□□ -1.72
SCN1A-218ENST00000640036 ZNF729A6NN14 1252 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 FFAR1O14842 300 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 RGS13O14921 159 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 SYNGR1O43759 233 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 ALOX5APP20292 161 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 S100A11P31949 105 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 PNLIPRP3Q17RR3 467 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 S100A7L2Q5SY68 101 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OVCH2Q7RTZ1 564 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 ATG4DQ86TL0 474 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OR1N2Q8NGR9 330 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OR2G3Q8NGZ4 309 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 C2orf88Q9BSF0 95 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 WSB1Q9Y6I7 421 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 CLDN12P56749 244 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 CNIH2Q6PI25 160 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 DMRTC2Q8IXT2 367 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 SYS1Q8N2H4 156 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OVOL2Q9BRP0 275 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 SEMA5BQ9P283 1151 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 ZC3H12DA2A288 527 aaKnown RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 FAM74A7A6NL05 159 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 J3KRW8 73 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 XRCC3O43542 346 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 CFDP00746 253 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-218ENST00000640036 FABP2P12104 132 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 IGHV1-2P23083 117 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 TWIST1Q15672 202 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 CT83Q5H943 113 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 LDLRAD2Q5SZI1 272 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OR1B1Q8NGR6 318 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 C14orf79Q96F83 325 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 VWA8A3KMH1 1905 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 PLXNA4Q9HCM2 1894 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 ODAMA1E959 279 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 BCL3P20749 454 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 GNG4P50150 75 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 FXYD3Q14802 87 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 C21orf62-AS1Q17RA5 79 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 OR2W3Q7Z3T1 314 aa4.3□□□□□ -1.72
SCN1A-218ENST00000640036 PRDM13Q9H4Q3 707 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms