RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CALHM1Q8IU99 346 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF525Q8N782 197 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 MRPL30Q8TCC3 161 aaKnown RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TAF15Q92804 592 aaKnown RBP eCLIP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 GALMQ96C23 342 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 THOC3Q96J01 351 aaKnown RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SSX3Q99909 188 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 LIME1Q9H400 295 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SDF2L1Q9HCN8 221 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ENY2Q9NPA8 101 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TGIF2-C20orf24A0A0A6YYL0 155 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TRAV17A0A0B4J275 112 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 MDFIC2A0A1B0GVS7 189 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 A1L4Q6 167 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SPINT2O43291 252 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 HRASP01112 189 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 IGHV3-9P01782 118 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H1BP16401 226 aaKnown RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 CCL20P78556 96 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TGIF1Q15583 401 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SSX2Q16385 188 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 IQCJQ1A5X6 159 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 C9orf135Q5VTT2 229 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF324BQ6AW86 544 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 Q6ZPA2 131 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM183AQ8IXX5 376 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 OR4F5Q8NH21 305 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ABHD3Q8WU67 409 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF837Q96EG3 531 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 RCC1LQ96I51 464 aaKnown RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 SIGLEC12Q96PQ1 595 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 UHRF2Q96PU4 802 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 OR4F4Q96R69 305 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 WDR61Q9GZS3 305 aaKnown RBP3.38□□□□□ -1.87
SCN1A-214ENST00000637038 C11orf1Q9H5F2 150 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 RPRMQ9NS64 109 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 BOD1L1Q8NFC6 3051 aa3.38□□□□□ -1.87
SCN1A-214ENST00000637038 ALPK2Q86TB3 2170 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ARID1BQ8NFD5 2236 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PPE3 182 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 SIRPB1O00241 398 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BKO60814 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BJP06899 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BOP23527 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BBP33778 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BDP58876 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PPP1CBP62140 327 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BCP62807 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HNF4GQ14541 408 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST2H2BEQ16778 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 FFAR4Q5NUL3 377 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 REC114Q7Z4M0 266 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 MRPL41Q8IXM3 137 aaKnown RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 BATF2Q8N1L9 274 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CISD2Q8N5K1 135 aaKnown RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR2M7Q8NG81 312 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR10G9Q8NGN4 311 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR10G7Q8NGN6 311 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR2T10Q8NGZ9 312 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM171Q8WVE6 324 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TNFRSF14Q92956 283 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BHQ93079 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 RPUSD4Q96CM3 377 aaKnown RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BNQ99877 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST1H2BMQ99879 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF665Q9H7R5 613 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 GP6Q9HCN6 339 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 MYO7BQ6PIF6 2116 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ARHGAP21Q5T5U3 1957 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1D-13A0A0B4J2D9 117 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OOEPA6NGQ2 149 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 MPDU1O75352 247 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 KLF7O75840 302 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TRGC1P0CF51 173 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 IGKV1-13P0DP09 117 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CEACAM6P40199 344 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 DSCR9P59020 149 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PDLIM3Q53GG5 364 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF66Q6ZN08 573 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PPP1R32Q7Z5V6 425 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HIST3H2BBQ8N257 126 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 WDR31Q8NA23 367 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CT55Q8WUE5 264 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 YPEL4Q96NS1 127 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 RSG1Q9BU20 258 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CHODLQ9H9P2 273 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 AHCTF1Q8WYP5 2266 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PCNX2A6NKB5 2137 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 DMXL1Q9Y485 3027 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 SEC16AO15027 2179 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 A0A087X0M5 115 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1B0GX30 115 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 LRRC3CA6NJW4 275 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 RAB29O14966 203 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 NGFP01138 241 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CCL4P13236 92 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 KIR2DS2P43631 304 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 LCN2P80188 198 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TNFRSF9Q07011 255 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms