RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ARID1AO14497 2285 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 MALRD1Q5VYJ5 2156 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 A0A1W2PPH5 198 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 KRASP01116 189 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 G6PCP35575 357 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 C8orf31Q8N9H6 132 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 LY6G5BQ8NDX9 201 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 ZNF596Q8TC21 504 aa13.79□□□□□ -0.2
CLN3-252ENST00000636907 SSBP3Q9BWW4 388 aaPredicted RBP13.79□□□□□ -0.2
CLN3-252ENST00000636907 PAIP2BQ9ULR5 123 aaKnown RBP13.79□□□□□ -0.2
CLN3-252ENST00000636907 DOCK11Q5JSL3 2073 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 E5RGE8 158 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 J3QR06 171 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 NXPH3O95157 252 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 P0C879 139 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 NUP62P37198 522 aaPredicted RBP13.78□□□□□ -0.2
CLN3-252ENST00000636907 THBS3P49746 956 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 POLR2GP62487 172 aaKnown RBP eCLIP13.78□□□□□ -0.2
CLN3-252ENST00000636907 ID3Q02535 119 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 TEX261Q6UWH6 196 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 LINC00311Q8N616 119 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 DMBX1Q8NFW5 382 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 AQP10Q96PS8 301 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 S1PR3Q99500 378 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 TMEM133Q9H2Q1 129 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 NSG2Q9Y328 171 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 PRELID3BQ9Y3B1 194 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 MMP24Q9Y5R2 645 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 U3KQ87 197 aa13.78□□□□□ -0.2
CLN3-252ENST00000636907 KANTRA0A1W2PQU2 76 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 RBFOX2O43251 390 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLN3-252ENST00000636907 BCL2L11O43521 198 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 LIPFP07098 398 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 HKR1P10072 659 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 ZNF833PQ6ZTB9 187 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 ABHD12Q8N2K0 398 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 ZNF383Q8NA42 475 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 BPESC1Q9GZL8 116 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 MAGT1Q9H0U3 335 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 C11orf1Q9H5F2 150 aa13.77□□□□□ -0.21
CLN3-252ENST00000636907 UTP20O75691 2785 aaKnown RBP13.77□□□□□ -0.21
CLN3-252ENST00000636907 ATG12O94817 140 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 HPRT1P00492 218 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 CFDP00746 253 aaPredicted RBP13.76□□□□□ -0.21
CLN3-252ENST00000636907 IGHV2-5P01817 119 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 CT45A6P0DMU7 189 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 CT45A5P0DMU8 189 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 CT45A7P0DMV0 189 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 KIR2DS2P43631 304 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 DLX1P56177 255 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 ZNF680Q8NEM1 530 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 OR10X1Q8NGY0 326 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 OR9G1Q8NH87 305 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 R3HDM4Q96D70 268 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 ADTRPQ96IZ2 230 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 PLEKHA2Q9HB19 425 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 ONECUT1Q9UBC0 465 aa13.76□□□□□ -0.21
CLN3-252ENST00000636907 LOC105371242A0A075B767 164 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 KIAA1324LA8MWY0 1029 aaPredicted RBP13.75□□□□□ -0.21
CLN3-252ENST00000636907 SSSCA1O60232 199 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 RBP4P02753 201 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 RPL12P30050 165 aaKnown RBP13.75□□□□□ -0.21
CLN3-252ENST00000636907 PDLIM4P50479 330 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 PRB3Q04118 309 aaPredicted RBP13.75□□□□□ -0.21
CLN3-252ENST00000636907 ZNF767PQ75MW2 155 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 CHD6Q8TD26 2715 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 AKAP6Q13023 2319 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 MARCH11A6NNE9 402 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 MIDNQ504T8 468 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 ZNF295-AS1Q8N0V1 137 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 OR4S2Q8NH73 311 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 ARPC5LQ9BPX5 153 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 COA4Q9NYJ1 87 aa13.75□□□□□ -0.21
CLN3-252ENST00000636907 IGHV2-26A0A0B4J1V2 119 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 P2RY1P47900 373 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 EXOSC2Q13868 293 aaKnown RBP13.74□□□□□ -0.21
CLN3-252ENST00000636907 H2BFWTQ7Z2G1 175 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 SLC51BQ86UW2 128 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 Q8N7P7 452 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 LRRK2Q5S007 2527 aa13.74□□□□□ -0.21
CLN3-252ENST00000636907 TOR1AO14656 332 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 CRYZL1O95825 349 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 PLA2G2AP14555 144 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 ZFP36P26651 326 aaKnown RBP13.73□□□□□ -0.21
CLN3-252ENST00000636907 ARF6P62330 175 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 DIAPH2-AS1Q14236 149 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 CLDND2Q8NHS1 167 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 NRGNQ92686 78 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 ST6GALNAC6Q969X2 333 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 TMEM186Q96B77 213 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 RBMXL1Q96E39 390 aaKnown RBP13.73□□□□□ -0.21
CLN3-252ENST00000636907 ZNF471Q9BX82 626 aaPredicted RBP13.73□□□□□ -0.21
CLN3-252ENST00000636907 MRPL20Q9BYC9 149 aaKnown RBP13.73□□□□□ -0.21
CLN3-252ENST00000636907 ZC4H2Q9NQZ6 224 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 FAM208BQ5VWN6 2430 aa13.73□□□□□ -0.21
CLN3-252ENST00000636907 hCG_1809904A0A1W2PP81 198 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 A0A1W2PPE2 198 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 A0A1W2PR64 198 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 A0A1W2PRV1 198 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 WRBO00258 174 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms