RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KIR2DL5AQ8N109 375 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 ZNF645Q8N7E2 425 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 DRAXINQ8NBI3 349 aaPredicted RBP10.71□□□□□ -0.69
CLN3-249ENST00000636685 ADAD2Q8NCV1 583 aaKnown RBP10.71□□□□□ -0.69
CLN3-249ENST00000636685 KIR2DL5BQ8NHK3 375 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 S100A13Q99584 98 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 ALG8Q9BVK2 526 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 SPACA1Q9HBV2 294 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 PEX16Q9Y5Y5 336 aa10.71□□□□□ -0.69
CLN3-249ENST00000636685 GTF2F2P13984 249 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 MFAP2P55001 183 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 ATP5G2Q06055 141 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 UXS1Q8NBZ7 420 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 MRPL30Q8TCC3 161 aaKnown RBP10.7□□□□□ -0.7
CLN3-249ENST00000636685 FAM46BQ96A09 425 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 C4orf36Q96KX1 117 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 SLC29A1Q99808 456 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 CIB1Q99828 191 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 PDCD1LG2Q9BQ51 273 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 DMRT1Q9Y5R6 373 aa10.7□□□□□ -0.7
CLN3-249ENST00000636685 DAPL1A0PJW8 107 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 TMEM213A2RRL7 107 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 LGALS9O00182 355 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 SC5DO75845 299 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 TUSC2O75896 110 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 ZNF93P35789 620 aaPredicted RBP10.69□□□□□ -0.7
CLN3-249ENST00000636685 SOX2P48431 317 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 TMEM177Q53S58 311 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 BTNL8Q6UX41 500 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 OR1L6Q8NGR2 347 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 GALMQ96C23 342 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 CNBD2Q96M20 576 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 PHB2Q99623 299 aa10.69□□□□□ -0.7
CLN3-249ENST00000636685 YTHDF1Q9BYJ9 559 aaKnown RBP10.69□□□□□ -0.7
CLN3-249ENST00000636685 MRPS26Q9BYN8 205 aaKnown RBP10.69□□□□□ -0.7
CLN3-249ENST00000636685 PAK1IP1Q9NWT1 392 aaPredicted RBP10.69□□□□□ -0.7
CLN3-249ENST00000636685 SMIM31A0A1B0GVY4 71 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 SAC3D1A6NKF1 404 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 FAM223BA6NKX1 122 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 DEFB4AO15263 64 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 CA11O75493 328 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 IGLV2-23P01705 113 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 OR9G9P0C7N8 305 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 RPL5P46777 297 aaKnown RBP10.68□□□□□ -0.7
CLN3-249ENST00000636685 DDI2Q5TDH0 399 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 ZNF554Q86TJ5 538 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 FAM223AQ8IWN6 122 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 ZNF383Q8NA42 475 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 IL1F10Q8WWZ1 152 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 RARRES2Q99969 163 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 JAM3Q9BX67 310 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 RIBC2Q9H4K1 309 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 STEAP1Q9UHE8 339 aa10.68□□□□□ -0.7
CLN3-249ENST00000636685 J3QRE1 110 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 GGCTO75223 188 aaKnown RBP10.67□□□□□ -0.7
CLN3-249ENST00000636685 ZNF780AO75290 641 aaPredicted RBP10.67□□□□□ -0.7
CLN3-249ENST00000636685 PROP1O75360 226 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 GPX5O75715 221 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 CDK2AP2O75956 126 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 S1PR2O95136 353 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 CRYGBP07316 175 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 TMED1Q13445 227 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 CBR4Q8N4T8 237 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 DHRSXQ8N5I4 330 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 OR2C3Q8N628 320 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 OR5AK2Q8NH90 309 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 SULT4A1Q9BR01 284 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 C11orf68Q9H3H3 251 aaKnown RBP10.67□□□□□ -0.7
CLN3-249ENST00000636685 MAP6D1Q9H9H5 199 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 GMPPBQ9Y5P6 360 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 UBR4Q5T4S7 5183 aa10.67□□□□□ -0.7
CLN3-249ENST00000636685 TRBV9A0A0B4J1U6 114 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 ZNF320A2RRD8 509 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 TMEM212A6NML5 194 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 E9PI62 339 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 HMGN3Q15651 99 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 SLC25A30Q5SVS4 291 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 RBPMS2Q6ZRY4 209 aaKnown RBP10.66□□□□□ -0.7
CLN3-249ENST00000636685 GPHB5Q86YW7 130 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 ZDHHC13Q8IUH4 622 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 Q8N1X5 172 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 NRBF2Q96F24 287 aa10.66□□□□□ -0.7
CLN3-249ENST00000636685 ISG20L2Q9H9L3 353 aaKnown RBP10.66□□□□□ -0.7
CLN3-249ENST00000636685 TRAV25A0A0B4J276 109 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 CAPGP40121 348 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 MRGPRG-AS1Q2M3A8 158 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 ODF3L2Q3SX64 289 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 SIGIRRQ6IA17 410 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 PDPNQ86YL7 162 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 SLC38A6Q8IZM9 456 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 OR11H2Q8NH07 326 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 RFKQ969G6 155 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 ORAI1Q96D31 301 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 DGCR14Q96DF8 476 aaKnown RBP10.65□□□□□ -0.7
CLN3-249ENST00000636685 TSC22D3Q99576 134 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 AGMATQ9BSE5 352 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 BANF2Q9H503 90 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 TMEM138Q9NPI0 162 aa10.65□□□□□ -0.7
CLN3-249ENST00000636685 SMPD3Q9NY59 655 aaPredicted RBP10.65□□□□□ -0.7
CLN3-249ENST00000636685 OAZ3Q9UMX2 235 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms