RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 H0YJW9 148 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 PEX14O75381 377 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 RBBP9O75884 186 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 PPYP01298 95 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 TNFSF8P32971 234 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 VDAC2P45880 294 aaPredicted RBP14.15□□□□□ -0.14
CLN3-247ENST00000636351 RFX2P48378 723 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 MRPS10P82664 201 aaKnown RBP14.15□□□□□ -0.14
CLN3-247ENST00000636351 DGCR2P98153 550 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 FOXB2Q5VYV0 432 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 TMEM17Q86X19 198 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 Q8N6K4 173 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 C5orf56Q8N8D9 126 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 ZNF383Q8NA42 475 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 C5orf30Q96GV9 206 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 RABL2AQ9UBK7 228 aaPredicted RBP14.15□□□□□ -0.14
CLN3-247ENST00000636351 KLK11Q9UBX7 282 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 RABL2BQ9UNT1 228 aa14.15□□□□□ -0.14
CLN3-247ENST00000636351 TET2Q6N021 2002 aaPredicted RBP14.14□□□□□ -0.15
CLN3-247ENST00000636351 FABP12A6NFH5 140 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 GABARAPH6UMI1 98 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 FGF16O43320 207 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 SLC22A5O76082 557 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 PRB2P02812 416 aaPredicted RBP14.14□□□□□ -0.15
CLN3-247ENST00000636351 MC5RP33032 325 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 THBS3P49746 956 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 CBX3Q13185 183 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 TMEM95Q3KNT9 176 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 ACTBL2Q562R1 376 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 OR8H1Q8NGG4 311 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 SLC5A7Q9GZV3 580 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 SLC35D1Q9NTN3 355 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 KIAA1456Q9P272 454 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 GAB2Q9UQC2 676 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 A3GALT2U3KPV4 340 aa14.14□□□□□ -0.15
CLN3-247ENST00000636351 PROP1O75360 226 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 OPN1MWP04001 364 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 OPN1MW2P0DN77 364 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 OPN1MW3P0DN78 364 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 LINC00205P59089 165 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 TSPAN5P62079 268 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 DYRK1AQ13627 763 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 SAMD5Q5TGI4 173 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 C11orf88Q6PI97 169 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 Q6ZS46 218 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 OVCH2Q7RTZ1 564 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 Q8N2B8 174 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 KLHDC1Q8N7A1 406 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 OR5AN1Q8NGI8 311 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 GIMAP1Q8WWP7 306 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 ADTRPQ96IZ2 230 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 RASL11BQ9BPW5 248 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 ZNF2Q9BSG1 426 aaPredicted RBP14.13□□□□□ -0.15
CLN3-247ENST00000636351 MTFP1Q9UDX5 166 aa14.13□□□□□ -0.15
CLN3-247ENST00000636351 M0QYG6 137 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 NBR2O15453 112 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 AMY1AP04745 511 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 AMY2AP04746 511 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 VSIG10L2P0DP72 767 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 F2RL1P55085 397 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 PLGLAQ15195 96 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 RTL8BQ17RB0 113 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 RNASE10Q5GAN6 216 aaKnown RBP14.12□□□□□ -0.15
CLN3-247ENST00000636351 KPRPQ5T749 579 aaPredicted RBP14.12□□□□□ -0.15
CLN3-247ENST00000636351 PDPNQ86YL7 162 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 LYSMD2Q8IV50 215 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 Q8N9W7 124 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 SMIM4Q8WVI0 70 aa14.12□□□□□ -0.15
CLN3-247ENST00000636351 RBMX2Q9Y388 322 aaKnown RBP14.12□□□□□ -0.15
CLN3-247ENST00000636351 CTDSPLO15194 276 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 IFNA6P05013 189 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 CNTFRP26992 372 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 TAS2R19P59542 299 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 RPS16P62249 146 aaKnown RBP14.11□□□□□ -0.15
CLN3-247ENST00000636351 PYDC2Q56P42 97 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 KCTD9Q7L273 389 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 OR6F1Q8NGZ6 308 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 TCTEX1D2Q8WW35 142 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 CCL28Q9NRJ3 127 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 LIN7CQ9NUP9 197 aaKnown RBP14.11□□□□□ -0.15
CLN3-247ENST00000636351 TAS2R8Q9NYW2 309 aa14.11□□□□□ -0.15
CLN3-247ENST00000636351 TNFSF12O43508 249 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 CD3DP04234 171 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 IGKV1-16P04430 117 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 TBPP20226 339 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 DUTP33316 252 aaKnown RBP14.1□□□□□ -0.15
CLN3-247ENST00000636351 TAGLNQ01995 201 aaKnown RBP14.1□□□□□ -0.15
CLN3-247ENST00000636351 SSBP1Q04837 148 aaKnown RBP14.1□□□□□ -0.15
CLN3-247ENST00000636351 OR2B11Q5JQS5 317 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 BVESQ8NE79 360 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 MOB3AQ96BX8 217 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 FLYWCH2Q96CP2 140 aaKnown RBP14.1□□□□□ -0.15
CLN3-247ENST00000636351 RITA1Q96K30 269 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 HARBI1Q96MB7 349 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 FXYD6Q9H0Q3 95 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 PLSCR3Q9NRY6 295 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 SERTAD4Q9NUC0 356 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 PRELID3BQ9Y3B1 194 aa14.1□□□□□ -0.15
CLN3-247ENST00000636351 RRASP10301 218 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 SPANXN2Q5MJ10 180 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms