RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 IGLV3-27P01718 113 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 TRGC1P0CF51 173 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 GALP22466 123 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 CDK9P50750 372 aaKnown RBP-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 TSPAN5P62079 268 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 GTF2BQ00403 316 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 CDK10Q15131 360 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 USF2Q15853 346 aaPredicted RBP-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 MED12LQ86YW9 2145 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 OR4A15Q8NGL6 344 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 OR6N2Q8NGY6 317 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 ASB13Q8WXK3 278 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 LINC00526Q96FQ7 95 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 AMELYQ99218 206 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 NKX6-2Q9C056 277 aaPredicted RBP-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 DMAC2Q9NW81 257 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 TMEM216Q9P0N5 145 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 SRRM2Q9UQ35 2752 aaKnown RBP-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 RAB3GAP2Q9H2M9 1393 aa-0.6□□□□□ -2.51
SCN1A-211ENST00000635893 TRAV7A0A075B6U4 112 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 LOC110117498A0A087WWA1 95 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 MEIS3P1A6NDR6 274 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 MGAT4DA6NG13 374 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 ITGB1BP1O14713 200 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 CDIPTO14735 213 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 SC5DO75845 299 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 VAPBO95292 243 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 LGALS1P09382 135 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 RPA3P35244 121 aaPredicted RBP-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 RANBP1P43487 201 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 TPI1P60174 286 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 GNA12Q03113 381 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 SCGB1D4Q6XE38 83 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 Q6ZT83 130 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 OR6K2Q8NGY2 324 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 RNASE6Q93091 150 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 SFRP2Q96HF1 295 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 CIB1Q99828 191 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 CHRAC1Q9NRG0 131 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 NSD2O96028 1365 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 TONSLQ96HA7 1378 aa-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 SCAF11Q99590 1463 aaKnown RBP-0.61□□□□□ -2.51
SCN1A-211ENST00000635893 SMARCA4P51532 1647 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 A0A0D9SG42 100 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 TRIM64CA6NLI5 447 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 H3BT86 120 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 MT-CO2P00403 227 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 PPBPP02775 128 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 CD79BP40259 229 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 AQP5P55064 265 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 C1orf158Q8N1D5 194 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 TMEM86AQ8N2M4 240 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 OR5K1Q8NHB7 308 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 AQP3Q92482 292 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 KIAA1143Q96AT1 154 aaPredicted RBP-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 SERPINI1Q99574 410 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 EIF5A2Q9GZV4 153 aaKnown RBP-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 SYT4Q9H2B2 425 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 POLR3HQ9Y535 204 aaPredicted RBP-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 LHFPL6Q9Y693 200 aa-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 EIF4G1Q04637 1599 aaKnown RBP-0.62□□□□□ -2.51
SCN1A-211ENST00000635893 CELSR1Q9NYQ6 3014 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 TRAV14DV4A0A0A6YYC5 116 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 TRAV38-1A0A0B4J264 116 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR51F1A6NGY5 319 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR2T1O43869 369 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 MPZL2O60487 215 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 SRMP19623 302 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 CA5AP35218 305 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 ZNF93P35789 620 aaPredicted RBP-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 UGT2B10P36537 528 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 RPL28P46779 137 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 GABRA2P47869 451 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 MIAQ16674 131 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR2D3Q8NGH3 330 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR4C6Q8NH72 309 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 FAM45AQ8TCE6 357 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 ZNF675Q8TD23 568 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR5P2Q8WZ92 322 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 OR51B6Q9H340 312 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 RGCCQ9H4X1 137 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 FLT4P35916 1363 aa-0.63□□□□□ -2.51
SCN1A-211ENST00000635893 REREQ9P2R6 1566 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 A0A1B0GTQ1 180 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 TRAPPC2LH3BP13 241 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 hCG_2039718K7EN88 272 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 PSMB8P28062 276 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 HSPA9P38646 679 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 EMP1P54849 157 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 ATP5J2P56134 94 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 SPINK7P58062 85 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 LINC00523Q86TU6 105 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 TOP1MTQ969P6 601 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 TESCQ96BS2 214 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 NMNAT3Q96T66 252 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 TMEM70Q9BUB7 260 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 FBXO44Q9H4M3 255 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 IFT46Q9NQC8 304 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 RMND1Q9NWS8 449 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 MS4A12Q9NXJ0 267 aa-0.64□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms