RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 TTC19Q6DKK2 380 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 REEP3Q6NUK4 255 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 NOXRED1Q6NXP6 359 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 C3orf33Q6P1S2 294 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MED27Q6P2C8 311 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TTC23LQ6PF05 361 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SPINT4Q6UDR6 99 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 UGT2A3Q6UWM9 527 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 UNQ9165/PRO28630Q6UXU0 137 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 PLEKHG7Q6ZR37 379 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF826PQ6ZT77 177 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SLC25A48Q6ZT89 311 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CCDC121Q6ZUS5 278 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TCF23Q7RTU1 214 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SLC30A8Q8IWU4 369 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 C1orf174Q8IYL3 243 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ST13P4Q8IZP2 240 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 DYNAPQ8N1N2 210 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 LRRC18Q8N456 261 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 RPP25LQ8N5L8 163 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF645Q8N7E2 425 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 UBL4BQ8N7F7 174 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CCNYL1Q8N7R7 359 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MORN4Q8NDC4 146 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 PLPP5Q8NEB5 264 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SLC26A10Q8NG04 563 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 OR9K2Q8NGE7 335 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 OR4D11Q8NGI4 311 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 OR13C2Q8NGS9 318 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 PFN4Q8NHR9 129 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF563Q8TA94 476 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 NUBPLQ8TB37 319 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 FAM81AQ8TBF8 368 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SLC25A40Q8TBP6 338 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CIRBP-AS1Q8TBR5 109 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 C16orf78Q8WTQ4 265 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TWIST2Q8WVJ9 160 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CAPSLQ8WWF8 208 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MAL2Q969L2 176 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MAGOHBQ96A72 148 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 APH1AQ96BI3 265 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TUBGCP3Q96CW5 907 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 RASD2Q96D21 266 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TEX37Q96LM6 180 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CCDC42Q96M95 316 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 GPR82Q96P67 336 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 OR7D2Q96RA2 312 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 VAT1Q99536 393 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 GPR22Q99680 433 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 BPIFA3Q9BQP9 254 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF649Q9BS31 505 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 SHANK2-AS3Q9BTD1 123 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 EFCAB11Q9BUY7 163 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 KIFC1Q9BW19 673 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 FRMD8P1Q9BZ68 369 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 IL22Q9GZX6 179 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ALX4Q9H161 411 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 OR51I1Q9H343 314 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ELOVL6Q9H5J4 265 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 RERGLQ9H628 205 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TRIM45Q9H8W5 580 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 PARVBQ9HBI1 364 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TMEM27Q9HBJ8 222 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CRLF2Q9HC73 371 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 EXOSC4Q9NPD3 245 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CA10Q9NS85 328 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CBLN4Q9NTU7 201 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 LYARQ9NX58 379 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ZNF586Q9NXT0 402 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TAS2R13Q9NYV9 303 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CCDC59Q9P031 241 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TMEM216Q9P0N5 145 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MTFP1Q9UDX5 166 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 LGALS13Q9UHV8 139 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CES1P1Q9UKY3 287 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TMCC3Q9ULS5 477 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 NOSIPQ9Y314 301 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CBY1Q9Y3M2 126 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 CSDC2Q9Y534 153 aaKnown RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 ATP6V1DQ9Y5K8 247 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 TSSC4Q9Y5U2 329 aaPredicted RBP0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 S4R3C0 116 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 MYCBP2O75592 4640 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 PKHD1L1Q86WI1 4243 aa0.56□□□□□ -2.32
SMARCB1-209ENST00000635578 DNAH5Q8TE73 4624 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 IGKV1D-42A0A075B6H8 117 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 TRAV27A0A087WT01 109 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 TMED7-TICAM2A0A0A6YYA0 188 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 ARPC4-TTLL3A0A0A6YYG9 625 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV3-72A0A0B4J1Y9 119 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 IGHV1-69DA0A0B4J2H0 117 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A0G2JMP0 313 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A0U1RQV1 116 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A0X1KG70 313 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 LCE6AA0A183 80 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 EXOC1LA0A1B0GW35 172 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 A0A1W2PPE3 182 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 TVP23AA6NH52 213 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 GOLGA6L10A6NI86 522 aa0.55□□□□□ -2.32
SMARCB1-209ENST00000635578 FAM159BA6NKW6 160 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms