RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SPTBP11277 2137 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 IGFBP7Q16270 282 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 PDPNQ86YL7 162 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 RPEQ96AT9 228 aa4.34□□□□□ -1.71
VPS13D-214ENST00000620676 A0A0J9YW62 118 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 C4orf51C9J302 202 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 PDCD6O75340 191 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 SAP30O75446 220 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF138P52744 262 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 TIMP4Q99727 224 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 TMUB1Q9BVT8 246 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 PXMP4Q9Y6I8 212 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 UNC13CQ8NB66 2214 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 PRTN3P24158 256 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 CSRP3P50461 194 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 GAS1P54826 345 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 CA7P43166 264 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 SSR4P51571 173 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 TEX29Q8N6K0 151 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 PLSCR4Q9NRQ2 329 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF256Q9Y2P7 627 aaPredicted RBP4.34□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF646O15015 1829 aaPredicted RBP4.34□□□□□ -1.72
VPS13D-214ENST00000620676 CXorf51AA0A1B0GTR3 108 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 FOXH1O75593 365 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 CELA2BP08218 269 aaPredicted RBP4.34□□□□□ -1.72
VPS13D-214ENST00000620676 OR1L1Q8NH94 360 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 SEPSECSQ9HD40 501 aaKnown RBP4.34□□□□□ -1.72
VPS13D-214ENST00000620676 TAAR3PQ9P1P4 343 aa4.34□□□□□ -1.72
VPS13D-214ENST00000620676 YBX2Q9Y2T7 364 aaKnown RBP4.34□□□□□ -1.72
VPS13D-214ENST00000620676 C22orf46C9J442 243 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CD46P15529 392 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 APOBEC1P41238 236 aaKnown RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PSG3Q16557 428 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 C16orf54Q6UWD8 224 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM38BQ9NVV0 291 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 ZNFX1Q9P2E3 1918 aaKnown RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TMEM229AB2RXF0 380 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 IGLV3-27P01718 113 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 SAP30LQ9HAJ7 183 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PROB1E7EW31 1015 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 HTN1P15515 57 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 ZFAND6Q6FIF0 208 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 SAXO1Q8IYX7 474 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CLUHP3Q96NS8 147 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 INSIG2Q9Y5U4 225 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PIKFYVEQ9Y2I7 2098 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 A0A087WWC5 75 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CD1BP29016 333 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 XIRP1Q702N8 1843 aaKnown RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 NUPR1O60356 82 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 STAG3L2P0CL84 134 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF581Q9P0T4 197 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 GVINP1Q7Z2Y8 2422 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 ZDHHC16Q969W1 377 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 ATP6V0BQ99437 205 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CSTL1Q9H114 145 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TRAV8-1A0A0A6YYK1 113 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CGAP01215 116 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 FGF22Q9HCT0 170 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 BGLAPP02818 100 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 REG1AP05451 166 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PAXXQ9BUH6 204 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 RRHO14718 337 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 IGHV4-34P06331 123 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 EVI2AP22794 236 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 RIGQ13278 110 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 C3orf36Q3SXR2 165 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 C10orf113Q5VZT2 155 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PAX2Q02962 417 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TCF24Q7RTU0 167 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 FADS6Q8N9I5 356 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TAF15Q92804 592 aaKnown RBP eCLIP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 TP53BP1Q12888 1972 aaPredicted RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PGLYRP1O75594 196 aaPredicted RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 MGPP08493 103 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 UNC119Q13432 240 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 IL2RAP01589 272 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 PLAURQ03405 335 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 MESP1Q9BRJ9 268 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CACNA1BQ00975 2339 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CACNA1EQ15878 2313 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 SPRY3O43610 288 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 HYPMO75409 117 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CTSBP07858 339 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 SUB1P53999 127 aaKnown RBP eCLIP4.33□□□□□ -1.721e-6■■□□□ 12.7
VPS13D-214ENST00000620676 ERHP84090 104 aaKnown RBP4.33□□□□□ -1.72
VPS13D-214ENST00000620676 CDC42EP3Q9UKI2 254 aa4.33□□□□□ -1.72
VPS13D-214ENST00000620676 IGKV1D-8A0A087WSZ0 117 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 IGHV2-5P01817 119 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 REG1BP48304 166 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 VAX1Q5SQQ9 334 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 UCN2Q96RP3 112 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 LEPP41159 167 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 ABHD17BQ5VST6 288 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 ZNF519Q8TB69 540 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 MYOZ3Q8TDC0 251 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 SMDT1Q9H4I9 107 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 OR51B2Q9Y5P1 312 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 ZFAND5O76080 213 aa4.32□□□□□ -1.72
VPS13D-214ENST00000620676 CEACAM21Q3KPI0 293 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms