RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TP53RKQ96S44 253 aa12.02□□□□□ -0.49
CPSF1-212ENST00000616140 GPR61Q9BZJ8 451 aa12.02□□□□□ -0.49
CPSF1-212ENST00000616140 PLAUP00749 431 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 RFPL3SP0C7P2 107 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 TNFRSF9Q07011 255 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 TBX15Q96SF7 602 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 PAXXQ9BUH6 204 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 COLQQ9Y215 455 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-212ENST00000616140 MARCH11A6NNE9 402 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 PRR33A8MZF0 331 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 ZG16O60844 167 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 MELTFP08582 738 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 HOXD4P09016 255 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-212ENST00000616140 LINC00869P0C866 280 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 PKIAP61925 76 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 ASPHD2Q6ICH7 369 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 VWA1Q6PCB0 445 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF645Q8N7E2 425 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 GRAMD2BQ96HH9 432 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 OR8G5Q8NG78 346 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 KLF14Q8TD94 323 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-212ENST00000616140 FAM117AQ9C073 453 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 CHD5Q8TDI0 1954 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 PLXNA1Q9UIW2 1896 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 LOC390937A0A1W2PQ73 354 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 RIGQ13278 110 aa12.01□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF552Q9H707 407 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-212ENST00000616140 UCP3P55916 312 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 CRIPAKQ8N1N5 446 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 CHCHD2Q9Y6H1 151 aaPredicted RBP12□□□□□ -0.49
CPSF1-212ENST00000616140 ISLRO14498 428 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 CDK2AP1O14519 115 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 HIST1H1BP16401 226 aaKnown RBP12□□□□□ -0.49
CPSF1-212ENST00000616140 RPL27AP46776 148 aaKnown RBP12□□□□□ -0.49
CPSF1-212ENST00000616140 KIAA2026Q5HYC2 2103 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 WDFY1Q8IWB7 410 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 C1orf174Q8IYL3 243 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 RPRMQ9NS64 109 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 IL36RNQ9UBH0 155 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 ANKRD36A6QL64 1941 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 CEACAM18A8MTB9 384 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 FAM90A26D6RGX4 464 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 APCSP02743 223 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 COX5BP10606 129 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 CD40P25942 277 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 BTCP35070 178 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 GLIPR1P48060 266 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 ASCL5Q7RTU5 278 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 MPTX1A8MV57 137 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 J3KRW8 73 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 F2RL2O00254 374 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 HYPMO75409 117 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 S1PR2O95136 353 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 HCP5Q6MZN7 132 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 PPP1R32Q7Z5V6 425 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 SAXO1Q8IYX7 474 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF714Q96N38 554 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 DDA1Q9BW61 102 aa12□□□□□ -0.49
CPSF1-212ENST00000616140 BRWD3Q6RI45 1802 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 LCTP09848 1927 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 AHRRA9YTQ3 701 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 ATP1A1-AS1Q5TC04 95 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF343Q6P1L6 599 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 RGPD3A6NKT7 1758 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-212ENST00000616140 RBBP6Q7Z6E9 1792 aaKnown RBP11.99□□□□□ -0.49
CPSF1-212ENST00000616140 CDX4O14627 284 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-212ENST00000616140 SCGB1C2P0DMR2 95 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF788Q6ZQV5 615 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 DRAM1Q8N682 238 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 LEAP2Q969E1 77 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 TXNDC17Q9BRA2 123 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 CALYQ9NYX4 217 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 DOCK8Q8NF50 2099 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 SCN4AP35499 1836 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 TGIF2-C20orf24A0A0A6YYL0 155 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 A0A1B0GTI1 187 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 OR2T8A6NH00 312 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 PRR32B1ATL7 298 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 DIRC3C9JPN6 131 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 PQLC2Q6ZP29 291 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 HSPB9Q9BQS6 159 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 TMEM140Q9NV12 185 aa11.99□□□□□ -0.49
CPSF1-212ENST00000616140 RPL30P62888 115 aaKnown RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 RPL8P62917 257 aaKnown RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 CALHM1Q8IU99 346 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF441Q8N8Z8 693 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 TMEM116Q8NCL8 245 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 HIST1H2BAQ96A08 127 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF837Q96EG3 531 aaPredicted RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 MAP1LC3CQ9BXW4 147 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 RNF222A6NCQ9 220 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 CORTO00230 105 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 ZNF25P17030 456 aaPredicted RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 BMI1P35226 326 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 P2RX4Q99571 388 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 MPDZO75970 2070 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 HSPE1P61604 102 aaKnown RBP11.98□□□□□ -0.49
CPSF1-212ENST00000616140 ABHD12Q8N2K0 398 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 LPAR2Q9HBW0 351 aa11.98□□□□□ -0.49
CPSF1-212ENST00000616140 MTCL1Q9Y4B5 1905 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms